miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 136469 0.72 0.534772
Target:  5'- cGCGCCgaccGCGCCGAGAUgGGCGUCcucCGg -3'
miRNA:   3'- -UGUGGa---UGUGGUUCUAgCCGCGGc--GC- -5'
29391 3' -56.6 NC_006151.1 + 89534 0.72 0.52491
Target:  5'- cCGCCUcgagcaGCGCCGAGGcCGGUggagGCCGCGa -3'
miRNA:   3'- uGUGGA------UGUGGUUCUaGCCG----CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 89882 0.72 0.534772
Target:  5'- cGCGCCgcucgggcucgGCGgUggGGUCGGCGuCCGCGu -3'
miRNA:   3'- -UGUGGa----------UGUgGuuCUAGCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 131118 0.72 0.544699
Target:  5'- -gGCCgcgGCG-CGGGAggccgCGGCGCCGCGg -3'
miRNA:   3'- ugUGGa--UGUgGUUCUa----GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 40036 0.72 0.554685
Target:  5'- cGCGCCgcCGCCGGG---GGCGCCGUGg -3'
miRNA:   3'- -UGUGGauGUGGUUCuagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 73816 0.72 0.574811
Target:  5'- cGCGCaugGCGCCGAGGuggUCGGCGCagGCa -3'
miRNA:   3'- -UGUGga-UGUGGUUCU---AGCCGCGg-CGc -5'
29391 3' -56.6 NC_006151.1 + 73997 0.72 0.554685
Target:  5'- gGCGCCaccgAgGCCAGGAggGGCGUCGUGc -3'
miRNA:   3'- -UGUGGa---UgUGGUUCUagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 55022 0.72 0.574811
Target:  5'- cCGCCgagggGCACCcGGc-CGGCGCCGUGg -3'
miRNA:   3'- uGUGGa----UGUGGuUCuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 5636 0.72 0.574811
Target:  5'- cCGCCggGCGCCGAGAcCGGCccgGCgGCGg -3'
miRNA:   3'- uGUGGa-UGUGGUUCUaGCCG---CGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 54390 0.72 0.554685
Target:  5'- cGCACCUGCGCgCGcgcGGccUCGGCGCCGa- -3'
miRNA:   3'- -UGUGGAUGUG-GU---UCu-AGCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 36017 0.72 0.574811
Target:  5'- gACGgCgGCAgCCAGGGcuccCGGCGCCGCGg -3'
miRNA:   3'- -UGUgGaUGU-GGUUCUa---GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 17098 0.72 0.52491
Target:  5'- cGCGCCcgucgggGCGCCGGGGgcuccggcggCGGUGCUGCGg -3'
miRNA:   3'- -UGUGGa------UGUGGUUCUa---------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 87593 0.72 0.52491
Target:  5'- gGCACCaucgACGCC-AGcUCGGcCGCCGUGg -3'
miRNA:   3'- -UGUGGa---UGUGGuUCuAGCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 31298 0.72 0.577845
Target:  5'- cCACCcACACCGuaaacucucacacGGAcacgcgcgcccacccUCGGCGCCGUGg -3'
miRNA:   3'- uGUGGaUGUGGU-------------UCU---------------AGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 85364 0.72 0.561708
Target:  5'- cGCGCCUGCGCguGGuccccggcgcgaacGUCGGCGCCa-- -3'
miRNA:   3'- -UGUGGAUGUGguUC--------------UAGCCGCGGcgc -5'
29391 3' -56.6 NC_006151.1 + 102213 0.72 0.574811
Target:  5'- gGCGCCcGCACCcacGGGgaGGCGCCGUGc -3'
miRNA:   3'- -UGUGGaUGUGGu--UCUagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 20986 0.72 0.564725
Target:  5'- uCGCCggGCACgAGGA-CGGCGCUGCc -3'
miRNA:   3'- uGUGGa-UGUGgUUCUaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 98473 0.72 0.554685
Target:  5'- gGCGCCUGCGCCAcgacugggacgAGGgcaCGGCcCCGCu -3'
miRNA:   3'- -UGUGGAUGUGGU-----------UCUa--GCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 136086 0.72 0.554685
Target:  5'- aGCGCCcGCugcgcuCCAucgcGGUCgGGCGCCGCGg -3'
miRNA:   3'- -UGUGGaUGu-----GGUu---CUAG-CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 137398 0.71 0.634919
Target:  5'- aGCGCCUGCccGCCGGGGggcgcccUCGccgcCGCCGCGg -3'
miRNA:   3'- -UGUGGAUG--UGGUUCU-------AGCc---GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.