miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 39884 0.7 0.646164
Target:  5'- -gGCCUGCcgGCCGAGuugcgcgccuUCuGCGCCGCGg -3'
miRNA:   3'- ugUGGAUG--UGGUUCu---------AGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 71014 0.7 0.646164
Target:  5'- gGCGCCaUGCGCCGcGAgcUCGcggagcugcGCGCCGCGc -3'
miRNA:   3'- -UGUGG-AUGUGGUuCU--AGC---------CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 76098 0.7 0.653313
Target:  5'- gGCGCCUucucCAUCAGGAcgcgcagcaucuggUCGGCcguGCCGCGc -3'
miRNA:   3'- -UGUGGAu---GUGGUUCU--------------AGCCG---CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 67959 0.7 0.655355
Target:  5'- cGCGCCggGgGCCAGGAccacgcagUcgcggcggcccgcCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGa-UgUGGUUCU--------A-------------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 77426 0.7 0.663512
Target:  5'- uGCACCgGCGCUcgcggGAGAUCGGCaaguucgggcucacGCUGCGc -3'
miRNA:   3'- -UGUGGaUGUGG-----UUCUAGCCG--------------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 138712 0.7 0.665549
Target:  5'- gGCGCUgcGCGCCGcgcgcGGGUCGuguacgcGCGCCGCGa -3'
miRNA:   3'- -UGUGGa-UGUGGU-----UCUAGC-------CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104197 0.7 0.666567
Target:  5'- gGCGCCaACGCCGAGAccgugaccaCGGCGCUGg- -3'
miRNA:   3'- -UGUGGaUGUGGUUCUa--------GCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 85623 0.7 0.666567
Target:  5'- cGCGCCgcCGCCGcg--CGGCGCCaGCGg -3'
miRNA:   3'- -UGUGGauGUGGUucuaGCCGCGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 31741 0.7 0.666567
Target:  5'- gGCGCCcGCGCCGGGGaC-GCGCCuGCGg -3'
miRNA:   3'- -UGUGGaUGUGGUUCUaGcCGCGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 97611 0.7 0.676731
Target:  5'- gGCACgUGCACCugcGAgCGGCG-CGCGg -3'
miRNA:   3'- -UGUGgAUGUGGuu-CUaGCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 105701 0.7 0.676731
Target:  5'- gACGCCggcgcggccgcGCGCCucGA-CGGCGCCGUGc -3'
miRNA:   3'- -UGUGGa----------UGUGGuuCUaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 99689 0.7 0.680787
Target:  5'- cGCGCCgacgGCGCCGGGGagacgcccauggaGGCGCCGaCGa -3'
miRNA:   3'- -UGUGGa---UGUGGUUCUag-----------CCGCGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 108635 0.7 0.686859
Target:  5'- -gGCCggaACACCGAGcgaUGGCGCcCGCGg -3'
miRNA:   3'- ugUGGa--UGUGGUUCua-GCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 83092 0.7 0.686859
Target:  5'- cACGCgUGCACCucGAgcgGGCGcCCGCGc -3'
miRNA:   3'- -UGUGgAUGUGGuuCUag-CCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 71085 0.7 0.686859
Target:  5'- cCACCacgGCGCCGcgGGcgCgGGCGCCGUGc -3'
miRNA:   3'- uGUGGa--UGUGGU--UCuaG-CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 67710 0.7 0.686859
Target:  5'- cCGCCUgGCGCCAcAGGcaCGGCGCgGCGc -3'
miRNA:   3'- uGUGGA-UGUGGU-UCUa-GCCGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 59279 0.7 0.686859
Target:  5'- uCACCUugAacaCGAGcgCGGCGUgGCGc -3'
miRNA:   3'- uGUGGAugUg--GUUCuaGCCGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 99603 0.7 0.686859
Target:  5'- aGCGCC-GCGCCGGGcuggCGcacaGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUGUGGUUCua--GC----CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 50228 0.69 0.696941
Target:  5'- uGCGgCUGCACCGGGAcaacguguuugCGGCGCCa-- -3'
miRNA:   3'- -UGUgGAUGUGGUUCUa----------GCCGCGGcgc -5'
29391 3' -56.6 NC_006151.1 + 11681 0.69 0.696941
Target:  5'- --cCCUGCGCCc-GA-CGGgGCCGCGg -3'
miRNA:   3'- uguGGAUGUGGuuCUaGCCgCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.