miRNA display CGI


Results 101 - 120 of 278 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 75595 0.69 0.696941
Target:  5'- uCGCCgACGacgaCGAGGUCGGCGCgcaCGCGc -3'
miRNA:   3'- uGUGGaUGUg---GUUCUAGCCGCG---GCGC- -5'
29391 3' -56.6 NC_006151.1 + 11681 0.69 0.696941
Target:  5'- --cCCUGCGCCc-GA-CGGgGCCGCGg -3'
miRNA:   3'- uguGGAUGUGGuuCUaGCCgCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 50228 0.69 0.696941
Target:  5'- uGCGgCUGCACCGGGAcaacguguuugCGGCGCCa-- -3'
miRNA:   3'- -UGUgGAUGUGGUUCUa----------GCCGCGGcgc -5'
29391 3' -56.6 NC_006151.1 + 100975 0.69 0.696941
Target:  5'- gGCuCCUG-GCCGAGGUCGaCGCCGUGu -3'
miRNA:   3'- -UGuGGAUgUGGUUCUAGCcGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 84286 0.69 0.70096
Target:  5'- uGC-CCUGCACCcAGAcgcgCGGCaacgcgagcgcgaugGCCGCGa -3'
miRNA:   3'- -UGuGGAUGUGGuUCUa---GCCG---------------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 27173 0.69 0.702965
Target:  5'- gGCGCCgcgugucgggGCGCCAGGGggccgcgcagaaGGCGCCGgGg -3'
miRNA:   3'- -UGUGGa---------UGUGGUUCUag----------CCGCGGCgC- -5'
29391 3' -56.6 NC_006151.1 + 54618 0.69 0.70697
Target:  5'- uGCGCCgggcGCGCCccgGGGGgaagCGGCGgCGCGa -3'
miRNA:   3'- -UGUGGa---UGUGG---UUCUa---GCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 119195 0.69 0.70697
Target:  5'- gGCGCCgccgacGCGCgCAAGGagGGCGCCGg- -3'
miRNA:   3'- -UGUGGa-----UGUG-GUUCUagCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 88167 0.69 0.70697
Target:  5'- cGCGCagGCGCCGAGGugguagacggugUCGGCGgCGUGg -3'
miRNA:   3'- -UGUGgaUGUGGUUCU------------AGCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 73578 0.69 0.70697
Target:  5'- cGCACC-ACcgucagggcgaaGCCGGGGUgcagcUGGCGCCGCa -3'
miRNA:   3'- -UGUGGaUG------------UGGUUCUA-----GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 69436 0.69 0.716935
Target:  5'- gGCGCCgcCGCCGuucgcguccUCGcGCGCCGCGg -3'
miRNA:   3'- -UGUGGauGUGGUucu------AGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 6230 0.69 0.716935
Target:  5'- -aGCCgcgGCGCCGGGAgcccUGGCuGCCGCc -3'
miRNA:   3'- ugUGGa--UGUGGUUCUa---GCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 64014 0.69 0.716935
Target:  5'- gGCGCCagGCGCCc-GAUC-GCGUCGCGa -3'
miRNA:   3'- -UGUGGa-UGUGGuuCUAGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 128797 0.69 0.716935
Target:  5'- uCGCCU-CGgCGAGcgCGGCGCgCGUGg -3'
miRNA:   3'- uGUGGAuGUgGUUCuaGCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 137081 0.69 0.716935
Target:  5'- cGCACCgGCGCCAGGccuucgCGGUGCUGg- -3'
miRNA:   3'- -UGUGGaUGUGGUUCua----GCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 125895 0.69 0.726827
Target:  5'- gACACgggccuccuggaCUACAgCGAGAUCcaGCGCCGCa -3'
miRNA:   3'- -UGUG------------GAUGUgGUUCUAGc-CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 131635 0.69 0.726827
Target:  5'- uACGCCc-CACCcacagguGGUCgGGCGCCGCa -3'
miRNA:   3'- -UGUGGauGUGGuu-----CUAG-CCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 136608 0.69 0.726827
Target:  5'- aGCACCUggACGCCGucaacgucacGGAccccgCGGCGcCCGUGg -3'
miRNA:   3'- -UGUGGA--UGUGGU----------UCUa----GCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 75110 0.69 0.726827
Target:  5'- -uGCCggGCGCCAGcagcuGGUCGGCGgCCgGCGg -3'
miRNA:   3'- ugUGGa-UGUGGUU-----CUAGCCGC-GG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 81723 0.69 0.726827
Target:  5'- gGCGCCggguccuCGCCgAAGGUCcaGGCGgCGCGg -3'
miRNA:   3'- -UGUGGau-----GUGG-UUCUAG--CCGCgGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.