miRNA display CGI


Results 121 - 140 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 58759 0.69 0.726827
Target:  5'- cCACCgcggcCGCCGAGcccguccaCGGCGCCGCc -3'
miRNA:   3'- uGUGGau---GUGGUUCua------GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 78754 0.69 0.733704
Target:  5'- cCGCCgucUGCGCCGAGG-CGGCGCUccugaccgccuucgGCGa -3'
miRNA:   3'- uGUGG---AUGUGGUUCUaGCCGCGG--------------CGC- -5'
29391 3' -56.6 NC_006151.1 + 38176 0.69 0.736639
Target:  5'- uCGCCcGCACCG----UGGCGCCGCu -3'
miRNA:   3'- uGUGGaUGUGGUucuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 98577 0.69 0.736639
Target:  5'- cGCACCUcgGCCGAGuUCGGCcCCGaCGc -3'
miRNA:   3'- -UGUGGAugUGGUUCuAGCCGcGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 56286 0.69 0.736639
Target:  5'- -gACCUGCcCCGcggcGGAggCGGaCGCCGCGc -3'
miRNA:   3'- ugUGGAUGuGGU----UCUa-GCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 100375 0.69 0.736639
Target:  5'- gGCGCCUuccGCGCCGAGGUCaacacGCaCCGCu -3'
miRNA:   3'- -UGUGGA---UGUGGUUCUAGc----CGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 86535 0.69 0.736639
Target:  5'- gACGCCUcGC-CCGAGGccgccgUGGCGCCGUu -3'
miRNA:   3'- -UGUGGA-UGuGGUUCUa-----GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 136798 0.69 0.736639
Target:  5'- cGCACgUACGCCGcGcUCGcggccgacGCGCCGCGc -3'
miRNA:   3'- -UGUGgAUGUGGUuCuAGC--------CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 35217 0.69 0.746359
Target:  5'- cGCGCCcAUuggcccgggcgaGCCGAGAU-GGcCGCCGCGg -3'
miRNA:   3'- -UGUGGaUG------------UGGUUCUAgCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104123 0.69 0.746359
Target:  5'- uGCGCCUGCGCgAcGuggCGGCcGaCCGCGg -3'
miRNA:   3'- -UGUGGAUGUGgUuCua-GCCG-C-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 100704 0.69 0.75022
Target:  5'- -gACCUGgACCGAGGcgcgcgaggagcaGGCGCCGCc -3'
miRNA:   3'- ugUGGAUgUGGUUCUag-----------CCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 141605 0.68 0.755979
Target:  5'- cCGCCcgGCgaggcuGCCGGGAUCGGgcgggucgcUGCCGCGg -3'
miRNA:   3'- uGUGGa-UG------UGGUUCUAGCC---------GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 74824 0.68 0.755979
Target:  5'- -gGCCUcgaugauguagaACACCAugGGuaGUUGGCGUCGCGg -3'
miRNA:   3'- ugUGGA------------UGUGGU--UC--UAGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 69567 0.68 0.755979
Target:  5'- gGCugC-GCACCGGGugccGCGCCGCGa -3'
miRNA:   3'- -UGugGaUGUGGUUCuagcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 64447 0.68 0.755979
Target:  5'- cCGCCUcCACCGucaGGAUggCGGCGCgCGCc -3'
miRNA:   3'- uGUGGAuGUGGU---UCUA--GCCGCG-GCGc -5'
29391 3' -56.6 NC_006151.1 + 46734 0.68 0.764545
Target:  5'- -gGCCgGC-CCGGGGUCGGCgaacaccGCCGCu -3'
miRNA:   3'- ugUGGaUGuGGUUCUAGCCG-------CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 107708 0.68 0.765491
Target:  5'- cCGCCgGCACCAAGGc---CGCCGCGg -3'
miRNA:   3'- uGUGGaUGUGGUUCUagccGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104340 0.68 0.765491
Target:  5'- gGCGCCcguCAUCGGGucgcucuUCGGCGCCGaCa -3'
miRNA:   3'- -UGUGGau-GUGGUUCu------AGCCGCGGC-Gc -5'
29391 3' -56.6 NC_006151.1 + 87166 0.68 0.765491
Target:  5'- gACGCCguacuacGCGCCcg---CGGCGCCGCc -3'
miRNA:   3'- -UGUGGa------UGUGGuucuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 99519 0.68 0.765491
Target:  5'- uGCGCC-ACugCA----UGGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUGugGUucuaGCCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.