Results 81 - 100 of 278 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29391 | 3' | -56.6 | NC_006151.1 | + | 100067 | 0.67 | 0.844714 |
Target: 5'- uGCGCgCggcCGCCGAGGUgcucgaggcgcCGGCGCCgGCGc -3' miRNA: 3'- -UGUG-Gau-GUGGUUCUA-----------GCCGCGG-CGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 57094 | 0.67 | 0.844714 |
Target: 5'- cGCACgCaGCGCCGcGAgcagCGcGCGCCGCc -3' miRNA: 3'- -UGUG-GaUGUGGUuCUa---GC-CGCGGCGc -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 78144 | 0.67 | 0.844714 |
Target: 5'- gGCGCCUcggacgACGCC----UCGGcCGCCGUGg -3' miRNA: 3'- -UGUGGA------UGUGGuucuAGCC-GCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 59142 | 0.67 | 0.843909 |
Target: 5'- gGCGCCcGCGggcggguCCAGGc-CGGCGUCGCGc -3' miRNA: 3'- -UGUGGaUGU-------GGUUCuaGCCGCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 10926 | 0.67 | 0.83658 |
Target: 5'- -gGCCcacgGCGCCgAGGGUgGGCGCgCGUGu -3' miRNA: 3'- ugUGGa---UGUGG-UUCUAgCCGCG-GCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 39464 | 0.67 | 0.83658 |
Target: 5'- uGCGCCgUGCGCUGGcccgGGUGCCGCGa -3' miRNA: 3'- -UGUGG-AUGUGGUUcuagCCGCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 20114 | 0.67 | 0.83658 |
Target: 5'- gGCGCCccgGCgacgggGCUggGGggcgGGCGCCGCGg -3' miRNA: 3'- -UGUGGa--UG------UGGuuCUag--CCGCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 69689 | 0.67 | 0.83658 |
Target: 5'- uGCGCCU-CGCCGucGAUggUGGCcGCCGCc -3' miRNA: 3'- -UGUGGAuGUGGUu-CUA--GCCG-CGGCGc -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 97500 | 0.67 | 0.83658 |
Target: 5'- aGCGCCU-CGCgGcGGU-GGCGCUGCGu -3' miRNA: 3'- -UGUGGAuGUGgUuCUAgCCGCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 137116 | 0.67 | 0.83658 |
Target: 5'- gACGCCUggggGCGCgCGacGGcgCGGCGCgaCGCGg -3' miRNA: 3'- -UGUGGA----UGUG-GU--UCuaGCCGCG--GCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 3090 | 0.67 | 0.83658 |
Target: 5'- gGCGgCgagcaGCGCCGAGA--GGcCGCCGCGg -3' miRNA: 3'- -UGUgGa----UGUGGUUCUagCC-GCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 105583 | 0.67 | 0.83658 |
Target: 5'- cCGCCUucgACGCgCGcgcGGAgCGGCuGCCGCGg -3' miRNA: 3'- uGUGGA---UGUG-GU---UCUaGCCG-CGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 115102 | 0.67 | 0.82826 |
Target: 5'- -gGCC-ACGuCCAGGc-CGGCGCCGCc -3' miRNA: 3'- ugUGGaUGU-GGUUCuaGCCGCGGCGc -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 7645 | 0.67 | 0.82826 |
Target: 5'- cCACCcGCGCCucgcGcUCGGCGCgCGCu -3' miRNA: 3'- uGUGGaUGUGGuu--CuAGCCGCG-GCGc -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 36883 | 0.67 | 0.82826 |
Target: 5'- gGCGCCccCGCaGAGAcagccccgcCGGCGCCGCGc -3' miRNA: 3'- -UGUGGauGUGgUUCUa--------GCCGCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 52743 | 0.67 | 0.82826 |
Target: 5'- gACGcCCUGCugCGcgcgcgccucgcAGcgCaGCGCCGCGg -3' miRNA: 3'- -UGU-GGAUGugGU------------UCuaGcCGCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 103071 | 0.67 | 0.82826 |
Target: 5'- cGCACggGCACCuGGAgCGGCGCgaGCu -3' miRNA: 3'- -UGUGgaUGUGGuUCUaGCCGCGg-CGc -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 8260 | 0.67 | 0.827418 |
Target: 5'- cGCGCCgggACGCCccuccgggggaaaGAGuGUCcccgcgcgGGCGCCGCGu -3' miRNA: 3'- -UGUGGa--UGUGG-------------UUC-UAG--------CCGCGGCGC- -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 5713 | 0.67 | 0.827418 |
Target: 5'- cGCugCUggcugugcuggugGCGCCGGGGUCcgaggccGCGCCGCc -3' miRNA: 3'- -UGugGA-------------UGUGGUUCUAGc------CGCGGCGc -5' |
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29391 | 3' | -56.6 | NC_006151.1 | + | 39131 | 0.67 | 0.819762 |
Target: 5'- gGCGCCccGCGCCcggccuGGGAcCcGCGCCGCGg -3' miRNA: 3'- -UGUGGa-UGUGG------UUCUaGcCGCGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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