miRNA display CGI


Results 101 - 120 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 103896 0.67 0.819762
Target:  5'- cCACCUgGCGCUgGAGGU-GGCGCgCGCGg -3'
miRNA:   3'- uGUGGA-UGUGG-UUCUAgCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 136937 0.67 0.819762
Target:  5'- -aGCCggGCGCCGA---CGGCGCCGUc -3'
miRNA:   3'- ugUGGa-UGUGGUUcuaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 71798 0.67 0.819762
Target:  5'- cGCACCaGCugGCCGAGcUCGcGCGUgGCGc -3'
miRNA:   3'- -UGUGGaUG--UGGUUCuAGC-CGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 83603 0.67 0.819762
Target:  5'- gGCGCgUguGCAgCAgcAGGUaCGGCGUCGCGa -3'
miRNA:   3'- -UGUGgA--UGUgGU--UCUA-GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 115946 0.67 0.819762
Target:  5'- cCGCCggGCGCgCGAGcgCGaGCGUCGUGa -3'
miRNA:   3'- uGUGGa-UGUG-GUUCuaGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 39131 0.67 0.819762
Target:  5'- gGCGCCccGCGCCcggccuGGGAcCcGCGCCGCGg -3'
miRNA:   3'- -UGUGGa-UGUGG------UUCUaGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 77217 0.67 0.819762
Target:  5'- cGCGCCgccgcgugugUGCGCCGGGA--GGCGCCccccgGCGg -3'
miRNA:   3'- -UGUGG----------AUGUGGUUCUagCCGCGG-----CGC- -5'
29391 3' -56.6 NC_006151.1 + 105944 0.67 0.818041
Target:  5'- cCGCCgcuCACCGAGGggcucauggagaCGGCGaCCGUGg -3'
miRNA:   3'- uGUGGau-GUGGUUCUa-----------GCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 35110 0.67 0.814581
Target:  5'- cGCGCCcGCGCgAGGGauuuUCGgacaaucucauuggcGCGCCGCGg -3'
miRNA:   3'- -UGUGGaUGUGgUUCU----AGC---------------CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 4277 0.67 0.811093
Target:  5'- gACGCCgcgGCagGCCAGGAcgcaGGCGuCCGCc -3'
miRNA:   3'- -UGUGGa--UG--UGGUUCUag--CCGC-GGCGc -5'
29391 3' -56.6 NC_006151.1 + 54138 0.67 0.811093
Target:  5'- -gGCuCUGCcCCGg---CGGCGCCGCGg -3'
miRNA:   3'- ugUG-GAUGuGGUucuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 92530 0.67 0.811093
Target:  5'- uGCACCggGCGCCGgacguGGAcUCGGUGCaGCa -3'
miRNA:   3'- -UGUGGa-UGUGGU-----UCU-AGCCGCGgCGc -5'
29391 3' -56.6 NC_006151.1 + 103763 0.67 0.811093
Target:  5'- cGCGCCgcgGCGCUGcgcgagucGGAgcgcuggCGGCGCUGCa -3'
miRNA:   3'- -UGUGGa--UGUGGU--------UCUa------GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 115139 0.67 0.811093
Target:  5'- uGCGCCUcggccagcacGCGCCcgAAGG-CGGCgaaGCCGCGc -3'
miRNA:   3'- -UGUGGA----------UGUGG--UUCUaGCCG---CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104798 0.67 0.811093
Target:  5'- cGCGCUcgUGCGCCGcGAccuggCGGCGgCGCGc -3'
miRNA:   3'- -UGUGG--AUGUGGUuCUa----GCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 141237 0.68 0.805814
Target:  5'- gACGgCUGCACCAcggagggcgaggAGAuccagucgcggggccUCGGCGgCUGCGg -3'
miRNA:   3'- -UGUgGAUGUGGU------------UCU---------------AGCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 99227 0.68 0.802263
Target:  5'- aGCGCCU-CGCCGcugcAGGUCguggaGGCGCuCGUGa -3'
miRNA:   3'- -UGUGGAuGUGGU----UCUAG-----CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 81390 0.68 0.802263
Target:  5'- cGCGCCgcgGCGCCcAGGUUGGCcaggGUgGCGu -3'
miRNA:   3'- -UGUGGa--UGUGGuUCUAGCCG----CGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 58196 0.68 0.802263
Target:  5'- cACGCCgugggcCACCAGGcaGUCGaaGCCGCGc -3'
miRNA:   3'- -UGUGGau----GUGGUUC--UAGCcgCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 39568 0.68 0.802263
Target:  5'- cCGCCUGCACCccGGGGcCGaGCcGCUGCGc -3'
miRNA:   3'- uGUGGAUGUGG--UUCUaGC-CG-CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.