miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 59142 0.67 0.843909
Target:  5'- gGCGCCcGCGggcggguCCAGGc-CGGCGUCGCGc -3'
miRNA:   3'- -UGUGGaUGU-------GGUUCuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 59279 0.7 0.686859
Target:  5'- uCACCUugAacaCGAGcgCGGCGUgGCGc -3'
miRNA:   3'- uGUGGAugUg--GUUCuaGCCGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 59410 0.71 0.605287
Target:  5'- aGCACCUcgagcagcagcgGCGCCAgcucGGcGUCGGCcGCCGCc -3'
miRNA:   3'- -UGUGGA------------UGUGGU----UC-UAGCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 60459 0.66 0.889254
Target:  5'- aGCACCaGCACgGAGggCGugaaGCGCgCGCa -3'
miRNA:   3'- -UGUGGaUGUGgUUCuaGC----CGCG-GCGc -5'
29391 3' -56.6 NC_006151.1 + 60604 0.66 0.87526
Target:  5'- cCGCCUcCACCGccGUCGuCGCCGCc -3'
miRNA:   3'- uGUGGAuGUGGUucUAGCcGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 61990 0.66 0.882368
Target:  5'- cACGCCUGCAagggcaCGGGugacgUGcGCGCCGCc -3'
miRNA:   3'- -UGUGGAUGUg-----GUUCua---GC-CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 63557 0.71 0.584938
Target:  5'- -aGCuCUGCACCAGGAUCugccgaaaguuGGCGUgGCGc -3'
miRNA:   3'- ugUG-GAUGUGGUUCUAG-----------CCGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 63771 0.68 0.793278
Target:  5'- gGCGCCcccgcguCGCCAggcgGGGUCGGCcGUCGCc -3'
miRNA:   3'- -UGUGGau-----GUGGU----UCUAGCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 64014 0.69 0.716935
Target:  5'- gGCGCCagGCGCCc-GAUC-GCGUCGCGa -3'
miRNA:   3'- -UGUGGa-UGUGGuuCUAGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 64224 0.66 0.889254
Target:  5'- gGCGCCUcggcguacaGgGCCGcGA-CGGCGgCGCGg -3'
miRNA:   3'- -UGUGGA---------UgUGGUuCUaGCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 64447 0.68 0.755979
Target:  5'- cCGCCUcCACCGucaGGAUggCGGCGCgCGCc -3'
miRNA:   3'- uGUGGAuGUGGU---UCUA--GCCGCG-GCGc -5'
29391 3' -56.6 NC_006151.1 + 64590 0.81 0.186216
Target:  5'- uGCACgUACGCCAGGcgguacgccagCGGCGCCGCGc -3'
miRNA:   3'- -UGUGgAUGUGGUUCua---------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 64626 0.66 0.860398
Target:  5'- cCGCCggcCGCgGGGcgCGGCGCCccGCGc -3'
miRNA:   3'- uGUGGau-GUGgUUCuaGCCGCGG--CGC- -5'
29391 3' -56.6 NC_006151.1 + 65458 0.66 0.867191
Target:  5'- gGCGCagcgGCGCCGAGAgucccaucaGGCgcaccacGCCGCGg -3'
miRNA:   3'- -UGUGga--UGUGGUUCUag-------CCG-------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 65795 0.66 0.852656
Target:  5'- gGCGCCgcccgGCGCgGacgugccgcgguGGAUgGGCGgCCGCGc -3'
miRNA:   3'- -UGUGGa----UGUGgU------------UCUAgCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 66398 0.66 0.889254
Target:  5'- aGCGCgaCUGCGCCGAGGa-GGC-CCGCu -3'
miRNA:   3'- -UGUG--GAUGUGGUUCUagCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 66513 0.66 0.860398
Target:  5'- -gAUCUuCGCCGGGcUCGcgcGCGCCGCGc -3'
miRNA:   3'- ugUGGAuGUGGUUCuAGC---CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 67279 0.78 0.251175
Target:  5'- cGCGCCUGCGCCGc---UGGUGCCGCGa -3'
miRNA:   3'- -UGUGGAUGUGGUucuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 67710 0.7 0.686859
Target:  5'- cCGCCUgGCGCCAcAGGcaCGGCGCgGCGc -3'
miRNA:   3'- uGUGGA-UGUGGU-UCUa-GCCGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 67862 0.74 0.458089
Target:  5'- -aGCCgGCGCCGAGGU-GGCGCgCGCGc -3'
miRNA:   3'- ugUGGaUGUGGUUCUAgCCGCG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.