miRNA display CGI


Results 101 - 120 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 67959 0.7 0.655355
Target:  5'- cGCGCCggGgGCCAGGAccacgcagUcgcggcggcccgcCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGa-UgUGGUUCU--------A-------------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 68171 0.66 0.882368
Target:  5'- cCACCaGCGCguAGG-CGGCGUCGUu -3'
miRNA:   3'- uGUGGaUGUGguUCUaGCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 68219 0.76 0.332203
Target:  5'- gGC-CCUGCGCCAGGcgCaGCGCcCGCGg -3'
miRNA:   3'- -UGuGGAUGUGGUUCuaGcCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 69436 0.69 0.716935
Target:  5'- gGCGCCgcCGCCGuucgcguccUCGcGCGCCGCGg -3'
miRNA:   3'- -UGUGGauGUGGUucu------AGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 69470 0.66 0.87526
Target:  5'- gGCGCCgGCACC---GUCGcCGCCGCc -3'
miRNA:   3'- -UGUGGaUGUGGuucUAGCcGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 69567 0.68 0.755979
Target:  5'- gGCugC-GCACCGGGugccGCGCCGCGa -3'
miRNA:   3'- -UGugGaUGUGGUUCuagcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 69611 0.66 0.87526
Target:  5'- cGCACCaGCGaCAGGAucucgcggUCGGCGucCCGCGc -3'
miRNA:   3'- -UGUGGaUGUgGUUCU--------AGCCGC--GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 69689 0.67 0.83658
Target:  5'- uGCGCCU-CGCCGucGAUggUGGCcGCCGCc -3'
miRNA:   3'- -UGUGGAuGUGGUu-CUA--GCCG-CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 70784 0.66 0.852656
Target:  5'- cGCGCCUccgGCACC-GGcgUGGCcGUCGUGg -3'
miRNA:   3'- -UGUGGA---UGUGGuUCuaGCCG-CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 70876 0.8 0.206719
Target:  5'- gGCGCCUcCGCCGacgAGAUCGcGCGCUGCGu -3'
miRNA:   3'- -UGUGGAuGUGGU---UCUAGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 71014 0.7 0.646164
Target:  5'- gGCGCCaUGCGCCGcGAgcUCGcggagcugcGCGCCGCGc -3'
miRNA:   3'- -UGUGG-AUGUGGUuCU--AGC---------CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 71085 0.7 0.686859
Target:  5'- cCACCacgGCGCCGcgGGcgCgGGCGCCGUGc -3'
miRNA:   3'- uGUGGa--UGUGGU--UCuaG-CCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 71306 0.68 0.793278
Target:  5'- aGCACCgcgucuuCACCGgcaAGcgCGGCGgCUGCGc -3'
miRNA:   3'- -UGUGGau-----GUGGU---UCuaGCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 71798 0.67 0.819762
Target:  5'- cGCACCaGCugGCCGAGcUCGcGCGUgGCGc -3'
miRNA:   3'- -UGUGGaUG--UGGUUCuAGC-CGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 72259 0.66 0.852656
Target:  5'- cCGCCgACGCCGAG--CGGCGUgGCc -3'
miRNA:   3'- uGUGGaUGUGGUUCuaGCCGCGgCGc -5'
29391 3' -56.6 NC_006151.1 + 72745 0.66 0.87526
Target:  5'- cGCAgCaGCGCCGAGucgcUGGCGCacaGCGg -3'
miRNA:   3'- -UGUgGaUGUGGUUCua--GCCGCGg--CGC- -5'
29391 3' -56.6 NC_006151.1 + 73107 0.66 0.867935
Target:  5'- uGCACCU-CGCCGg---CGGCGCgcccgCGCGg -3'
miRNA:   3'- -UGUGGAuGUGGUucuaGCCGCG-----GCGC- -5'
29391 3' -56.6 NC_006151.1 + 73578 0.69 0.70697
Target:  5'- cGCACC-ACcgucagggcgaaGCCGGGGUgcagcUGGCGCCGCa -3'
miRNA:   3'- -UGUGGaUG------------UGGUUCUA-----GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 73816 0.72 0.574811
Target:  5'- cGCGCaugGCGCCGAGGuggUCGGCGCagGCa -3'
miRNA:   3'- -UGUGga-UGUGGUUCU---AGCCGCGg-CGc -5'
29391 3' -56.6 NC_006151.1 + 73997 0.72 0.554685
Target:  5'- gGCGCCaccgAgGCCAGGAggGGCGUCGUGc -3'
miRNA:   3'- -UGUGGa---UgUGGUUCUagCCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.