miRNA display CGI


Results 121 - 140 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 74043 0.67 0.844714
Target:  5'- uCACCgucucCugCAGGAUCagcauGGCGuCCGCGu -3'
miRNA:   3'- uGUGGau---GugGUUCUAG-----CCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 74300 0.66 0.852656
Target:  5'- aGCACCg--ACCAc--UCGGCGUCGUGg -3'
miRNA:   3'- -UGUGGaugUGGUucuAGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 74824 0.68 0.755979
Target:  5'- -gGCCUcgaugauguagaACACCAugGGuaGUUGGCGUCGCGg -3'
miRNA:   3'- ugUGGA------------UGUGGU--UC--UAGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 75110 0.69 0.726827
Target:  5'- -uGCCggGCGCCAGcagcuGGUCGGCGgCCgGCGg -3'
miRNA:   3'- ugUGGa-UGUGGUU-----CUAGCCGC-GG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 75252 0.66 0.857326
Target:  5'- gGCGCaCUGCACCuccgcgggcuccuGGcgCaGCGCCGCc -3'
miRNA:   3'- -UGUG-GAUGUGGu------------UCuaGcCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 75595 0.69 0.696941
Target:  5'- uCGCCgACGacgaCGAGGUCGGCGCgcaCGCGc -3'
miRNA:   3'- uGUGGaUGUg---GUUCUAGCCGCG---GCGC- -5'
29391 3' -56.6 NC_006151.1 + 76098 0.7 0.653313
Target:  5'- gGCGCCUucucCAUCAGGAcgcgcagcaucuggUCGGCcguGCCGCGc -3'
miRNA:   3'- -UGUGGAu---GUGGUUCU--------------AGCCG---CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 76870 0.73 0.505399
Target:  5'- cGCGCCgcCGCCAGGAgcccCaGCGCCGCc -3'
miRNA:   3'- -UGUGGauGUGGUUCUa---GcCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 77217 0.67 0.819762
Target:  5'- cGCGCCgccgcgugugUGCGCCGGGA--GGCGCCccccgGCGg -3'
miRNA:   3'- -UGUGG----------AUGUGGUUCUagCCGCGG-----CGC- -5'
29391 3' -56.6 NC_006151.1 + 77426 0.7 0.663512
Target:  5'- uGCACCgGCGCUcgcggGAGAUCGGCaaguucgggcucacGCUGCGc -3'
miRNA:   3'- -UGUGGaUGUGG-----UUCUAGCCG--------------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 77974 0.73 0.47674
Target:  5'- cGCGCCggUACGCCGAGcgC-GCGCUGCGc -3'
miRNA:   3'- -UGUGG--AUGUGGUUCuaGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 78144 0.67 0.844714
Target:  5'- gGCGCCUcggacgACGCC----UCGGcCGCCGUGg -3'
miRNA:   3'- -UGUGGA------UGUGGuucuAGCC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 78693 0.68 0.765491
Target:  5'- uACGCCg--GCCGGGGccUCGuCGCCGCGa -3'
miRNA:   3'- -UGUGGaugUGGUUCU--AGCcGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 78754 0.69 0.733704
Target:  5'- cCGCCgucUGCGCCGAGG-CGGCGCUccugaccgccuucgGCGa -3'
miRNA:   3'- uGUGG---AUGUGGUUCUaGCCGCGG--------------CGC- -5'
29391 3' -56.6 NC_006151.1 + 81273 0.69 0.696941
Target:  5'- aGCGCCUcgGCGgggaucUCGGGcgCGGCGCgCGCGa -3'
miRNA:   3'- -UGUGGA--UGU------GGUUCuaGCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 81390 0.68 0.802263
Target:  5'- cGCGCCgcgGCGCCcAGGUUGGCcaggGUgGCGu -3'
miRNA:   3'- -UGUGGa--UGUGGuUCUAGCCG----CGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 81723 0.69 0.726827
Target:  5'- gGCGCCggguccuCGCCgAAGGUCcaGGCGgCGCGg -3'
miRNA:   3'- -UGUGGau-----GUGG-UUCUAG--CCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 81887 0.72 0.574811
Target:  5'- aGCGCCgGCGCCGAGGcgcgccggUCGcggcGCGCCGCc -3'
miRNA:   3'- -UGUGGaUGUGGUUCU--------AGC----CGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 81943 0.66 0.889254
Target:  5'- -gGCC-ACGCCGAGG-CGcacCGCCGCGc -3'
miRNA:   3'- ugUGGaUGUGGUUCUaGCc--GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 81992 0.68 0.793278
Target:  5'- uGCACCacgGCgGCCAGGGcggccgCGuGCGCCGCc -3'
miRNA:   3'- -UGUGGa--UG-UGGUUCUa-----GC-CGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.