miRNA display CGI


Results 61 - 80 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 106662 0.68 0.793278
Target:  5'- cGCACgUGCGCgAGGccgCGGCGCUcgGCGc -3'
miRNA:   3'- -UGUGgAUGUGgUUCua-GCCGCGG--CGC- -5'
29391 3' -56.6 NC_006151.1 + 106628 0.72 0.534772
Target:  5'- gACGCCgcgguCACCGAGcgCcuGGaCGCCGCGg -3'
miRNA:   3'- -UGUGGau---GUGGUUCuaG--CC-GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 106078 0.68 0.784149
Target:  5'- cCACCgccGCGCCGacugGGAcUCGGCggccaaggccGCCGCGg -3'
miRNA:   3'- uGUGGa--UGUGGU----UCU-AGCCG----------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 105944 0.67 0.818041
Target:  5'- cCGCCgcuCACCGAGGggcucauggagaCGGCGaCCGUGg -3'
miRNA:   3'- uGUGGau-GUGGUUCUa-----------GCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 105701 0.7 0.676731
Target:  5'- gACGCCggcgcggccgcGCGCCucGA-CGGCGCCGUGc -3'
miRNA:   3'- -UGUGGa----------UGUGGuuCUaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 105583 0.67 0.83658
Target:  5'- cCGCCUucgACGCgCGcgcGGAgCGGCuGCCGCGg -3'
miRNA:   3'- uGUGGA---UGUG-GU---UCUaGCCG-CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 105406 0.68 0.802263
Target:  5'- cGCGCCUGCccGCCAAGuUCGuGgGgCGCa -3'
miRNA:   3'- -UGUGGAUG--UGGUUCuAGC-CgCgGCGc -5'
29391 3' -56.6 NC_006151.1 + 105203 0.71 0.605287
Target:  5'- -gACgCUGCGCCAGGAggCGGacaCGCUGCGg -3'
miRNA:   3'- ugUG-GAUGUGGUUCUa-GCC---GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104884 0.71 0.635941
Target:  5'- cGCGCCUGCugCGcgAGGUgguggacgcggCGGCGgCGCGc -3'
miRNA:   3'- -UGUGGAUGugGU--UCUA-----------GCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104798 0.67 0.811093
Target:  5'- cGCGCUcgUGCGCCGcGAccuggCGGCGgCGCGc -3'
miRNA:   3'- -UGUGG--AUGUGGUuCUa----GCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104693 0.78 0.251175
Target:  5'- uGCACCUgcacgugccgaGCACCGAGcugcugcgCGGCGCCGUGa -3'
miRNA:   3'- -UGUGGA-----------UGUGGUUCua------GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104605 0.71 0.625716
Target:  5'- -aGCCgcgGCGCCGAGAUC--UGCCGCGc -3'
miRNA:   3'- ugUGGa--UGUGGUUCUAGccGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104340 0.68 0.765491
Target:  5'- gGCGCCcguCAUCGGGucgcucuUCGGCGCCGaCa -3'
miRNA:   3'- -UGUGGau-GUGGUUCu------AGCCGCGGC-Gc -5'
29391 3' -56.6 NC_006151.1 + 104252 0.81 0.169232
Target:  5'- cGCACCUGC-CCGAGAacgcCGGCGCgGCGg -3'
miRNA:   3'- -UGUGGAUGuGGUUCUa---GCCGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 104197 0.7 0.666567
Target:  5'- gGCGCCaACGCCGAGAccgugaccaCGGCGCUGg- -3'
miRNA:   3'- -UGUGGaUGUGGUUCUa--------GCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 104123 0.69 0.746359
Target:  5'- uGCGCCUGCGCgAcGuggCGGCcGaCCGCGg -3'
miRNA:   3'- -UGUGGAUGUGgUuCua-GCCG-C-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 104045 0.66 0.880259
Target:  5'- aGCGCCaGCucugggcgcgcgcgGCCGAcg-CGGCGCUGCGc -3'
miRNA:   3'- -UGUGGaUG--------------UGGUUcuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 103896 0.67 0.819762
Target:  5'- cCACCUgGCGCUgGAGGU-GGCGCgCGCGg -3'
miRNA:   3'- uGUGGA-UGUGG-UUCUAgCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 103763 0.67 0.811093
Target:  5'- cGCGCCgcgGCGCUGcgcgagucGGAgcgcuggCGGCGCUGCa -3'
miRNA:   3'- -UGUGGa--UGUGGU--------UCUa------GCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 103071 0.67 0.82826
Target:  5'- cGCACggGCACCuGGAgCGGCGCgaGCu -3'
miRNA:   3'- -UGUGgaUGUGGuUCUaGCCGCGg-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.