miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 102763 0.66 0.882368
Target:  5'- cGCGCaagcugGCGCUGAuGGUCGGCGacgccuCCGCGa -3'
miRNA:   3'- -UGUGga----UGUGGUU-CUAGCCGC------GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 102213 0.72 0.574811
Target:  5'- gGCGCCcGCACCcacGGGgaGGCGCCGUGc -3'
miRNA:   3'- -UGUGGaUGUGGu--UCUagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 101546 0.66 0.888576
Target:  5'- cGCGCCUGCGCCcgg--CGGacguguacgcgcaCGUCGCGg -3'
miRNA:   3'- -UGUGGAUGUGGuucuaGCC-------------GCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 101425 0.73 0.515117
Target:  5'- cGCGCCgaguccuucACGCUGGucguGGUCGGCGCCGUGg -3'
miRNA:   3'- -UGUGGa--------UGUGGUU----CUAGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 100975 0.69 0.696941
Target:  5'- gGCuCCUG-GCCGAGGUCGaCGCCGUGu -3'
miRNA:   3'- -UGuGGAUgUGGUUCUAGCcGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 100704 0.69 0.75022
Target:  5'- -gACCUGgACCGAGGcgcgcgaggagcaGGCGCCGCc -3'
miRNA:   3'- ugUGGAUgUGGUUCUag-----------CCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 100622 0.68 0.793278
Target:  5'- cGCGCUgGgACCu-GGUCaGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUgUGGuuCUAGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 100375 0.69 0.736639
Target:  5'- gGCGCCUuccGCGCCGAGGUCaacacGCaCCGCu -3'
miRNA:   3'- -UGUGGA---UGUGGUUCUAGc----CGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 100067 0.67 0.844714
Target:  5'- uGCGCgCggcCGCCGAGGUgcucgaggcgcCGGCGCCgGCGc -3'
miRNA:   3'- -UGUG-Gau-GUGGUUCUA-----------GCCGCGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 99689 0.7 0.680787
Target:  5'- cGCGCCgacgGCGCCGGGGagacgcccauggaGGCGCCGaCGa -3'
miRNA:   3'- -UGUGGa---UGUGGUUCUag-----------CCGCGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 99603 0.7 0.686859
Target:  5'- aGCGCC-GCGCCGGGcuggCGcacaGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUGUGGUUCua--GC----CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 99519 0.68 0.765491
Target:  5'- uGCGCC-ACugCA----UGGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUGugGUucuaGCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 99227 0.68 0.802263
Target:  5'- aGCGCCU-CGCCGcugcAGGUCguggaGGCGCuCGUGa -3'
miRNA:   3'- -UGUGGAuGUGGU----UCUAG-----CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 99075 0.75 0.379391
Target:  5'- uGCGCCcggGCACCGuGGcgCGGCGCCuGCGc -3'
miRNA:   3'- -UGUGGa--UGUGGU-UCuaGCCGCGG-CGC- -5'
29391 3' -56.6 NC_006151.1 + 98577 0.69 0.736639
Target:  5'- cGCACCUcgGCCGAGuUCGGCcCCGaCGc -3'
miRNA:   3'- -UGUGGAugUGGUUCuAGCCGcGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 98473 0.72 0.554685
Target:  5'- gGCGCCUGCGCCAcgacugggacgAGGgcaCGGCcCCGCu -3'
miRNA:   3'- -UGUGGAUGUGGU-----------UCUa--GCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 98403 0.66 0.878129
Target:  5'- cGCGCCUACGUCGAGAcgggcaccugcgaGGCGgCCGUGc -3'
miRNA:   3'- -UGUGGAUGUGGUUCUag-----------CCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 97611 0.7 0.676731
Target:  5'- gGCACgUGCACCugcGAgCGGCG-CGCGg -3'
miRNA:   3'- -UGUGgAUGUGGuu-CUaGCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 97500 0.67 0.83658
Target:  5'- aGCGCCU-CGCgGcGGU-GGCGCUGCGu -3'
miRNA:   3'- -UGUGGAuGUGgUuCUAgCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 96863 0.77 0.303219
Target:  5'- cGCGCC--CGCCGGGcgCGGCGCgCGCGg -3'
miRNA:   3'- -UGUGGauGUGGUUCuaGCCGCG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.