miRNA display CGI


Results 101 - 120 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 96577 0.66 0.883067
Target:  5'- aGCGCCgccucgcggcgcgagGCGCCGGGcgCGggcGCGCCGaCGu -3'
miRNA:   3'- -UGUGGa--------------UGUGGUUCuaGC---CGCGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 96190 0.73 0.515117
Target:  5'- aGCACgaGCGCCAuGG--GGCGCCGCGu -3'
miRNA:   3'- -UGUGgaUGUGGUuCUagCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 95383 0.68 0.774884
Target:  5'- gACGCCguucuCGCCGGGcgUGGC-CCGCu -3'
miRNA:   3'- -UGUGGau---GUGGUUCuaGCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 94750 0.66 0.852656
Target:  5'- cGCACUcGCGCgGAaacaGGCGCCGCa -3'
miRNA:   3'- -UGUGGaUGUGgUUcuagCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 94023 0.71 0.605287
Target:  5'- aGCGCCgcgcGCACguAGcgcUCGcGCGCCGCGg -3'
miRNA:   3'- -UGUGGa---UGUGguUCu--AGC-CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 92530 0.67 0.811093
Target:  5'- uGCACCggGCGCCGgacguGGAcUCGGUGCaGCa -3'
miRNA:   3'- -UGUGGa-UGUGGU-----UCU-AGCCGCGgCGc -5'
29391 3' -56.6 NC_006151.1 + 91671 0.73 0.515117
Target:  5'- uCACCUGCGCCGGG--UGGUGCgCGUGg -3'
miRNA:   3'- uGUGGAUGUGGUUCuaGCCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 91304 0.71 0.635941
Target:  5'- aGCAgCcGCGCCGGGAa-GGCGCCGUa -3'
miRNA:   3'- -UGUgGaUGUGGUUCUagCCGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 90359 0.66 0.851871
Target:  5'- -gGCUggcgACGCCGAGcagcaucGUCGaCGCCGCGg -3'
miRNA:   3'- ugUGGa---UGUGGUUC-------UAGCcGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 90249 0.66 0.87526
Target:  5'- -gGCCaGCGCCcagcccgcggcgAAGAcggCGGCGCCGaCGa -3'
miRNA:   3'- ugUGGaUGUGG------------UUCUa--GCCGCGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 90222 0.74 0.430864
Target:  5'- gACGCCg--GCCGAGAUC-GCGUCGCGg -3'
miRNA:   3'- -UGUGGaugUGGUUCUAGcCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 89882 0.72 0.534772
Target:  5'- cGCGCCgcucgggcucgGCGgUggGGUCGGCGuCCGCGu -3'
miRNA:   3'- -UGUGGa----------UGUgGuuCUAGCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 89700 0.66 0.87526
Target:  5'- cCGCC-GCGuCCAGGAacccggCGGCGCCGg- -3'
miRNA:   3'- uGUGGaUGU-GGUUCUa-----GCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 89534 0.72 0.52491
Target:  5'- cCGCCUcgagcaGCGCCGAGGcCGGUggagGCCGCGa -3'
miRNA:   3'- uGUGGA------UGUGGUUCUaGCCG----CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 89456 0.71 0.584938
Target:  5'- uACGCCUGCACCAgcAGGgcccgcgucaCGuGCGCgGCGg -3'
miRNA:   3'- -UGUGGAUGUGGU--UCUa---------GC-CGCGgCGC- -5'
29391 3' -56.6 NC_006151.1 + 89259 0.66 0.867935
Target:  5'- aGCGCCgu--CguGGucgaCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGauguGguUCua--GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 89044 0.66 0.852656
Target:  5'- uGCGCUUGCGCCcguGcgCGGUggccuugucGCCGUGg -3'
miRNA:   3'- -UGUGGAUGUGGuu-CuaGCCG---------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 88753 0.66 0.87526
Target:  5'- gACACCUcGC-CCGAGAcgUUGGCgacgGUCGCGc -3'
miRNA:   3'- -UGUGGA-UGuGGUUCU--AGCCG----CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 88167 0.69 0.70697
Target:  5'- cGCGCagGCGCCGAGGugguagacggugUCGGCGgCGUGg -3'
miRNA:   3'- -UGUGgaUGUGGUUCU------------AGCCGCgGCGC- -5'
29391 3' -56.6 NC_006151.1 + 87593 0.72 0.52491
Target:  5'- gGCACCaucgACGCC-AGcUCGGcCGCCGUGg -3'
miRNA:   3'- -UGUGGa---UGUGGuUCuAGCC-GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.