miRNA display CGI


Results 121 - 140 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 3' -56.6 NC_006151.1 + 70784 0.66 0.852656
Target:  5'- cGCGCCUccgGCACC-GGcgUGGCcGUCGUGg -3'
miRNA:   3'- -UGUGGA---UGUGGuUCuaGCCG-CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 65795 0.66 0.852656
Target:  5'- gGCGCCgcccgGCGCgGacgugccgcgguGGAUgGGCGgCCGCGc -3'
miRNA:   3'- -UGUGGa----UGUGgU------------UCUAgCCGC-GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 58566 0.66 0.867935
Target:  5'- uCGCCgcCGCCGcccgcCGGCGUCGCGg -3'
miRNA:   3'- uGUGGauGUGGUucua-GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 73107 0.66 0.867935
Target:  5'- uGCACCU-CGCCGg---CGGCGCgcccgCGCGg -3'
miRNA:   3'- -UGUGGAuGUGGUucuaGCCGCG-----GCGC- -5'
29391 3' -56.6 NC_006151.1 + 85531 0.66 0.867935
Target:  5'- -gGCCUGCugCugcugCGGCGCCuGCu -3'
miRNA:   3'- ugUGGAUGugGuucuaGCCGCGG-CGc -5'
29391 3' -56.6 NC_006151.1 + 72745 0.66 0.87526
Target:  5'- cGCAgCaGCGCCGAGucgcUGGCGCacaGCGg -3'
miRNA:   3'- -UGUgGaUGUGGUUCua--GCCGCGg--CGC- -5'
29391 3' -56.6 NC_006151.1 + 69611 0.66 0.87526
Target:  5'- cGCACCaGCGaCAGGAucucgcggUCGGCGucCCGCGc -3'
miRNA:   3'- -UGUGGaUGUgGUUCU--------AGCCGC--GGCGC- -5'
29391 3' -56.6 NC_006151.1 + 69470 0.66 0.87526
Target:  5'- gGCGCCgGCACC---GUCGcCGCCGCc -3'
miRNA:   3'- -UGUGGaUGUGGuucUAGCcGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 60604 0.66 0.87526
Target:  5'- cCGCCUcCACCGccGUCGuCGCCGCc -3'
miRNA:   3'- uGUGGAuGUGGUucUAGCcGCGGCGc -5'
29391 3' -56.6 NC_006151.1 + 3196 0.66 0.87526
Target:  5'- aGCACCaccACGCgcacguccuCGGGGUCGGCuaucuGCCGCa -3'
miRNA:   3'- -UGUGGa--UGUG---------GUUCUAGCCG-----CGGCGc -5'
29391 3' -56.6 NC_006151.1 + 133232 0.66 0.87526
Target:  5'- cGCGCC-GCGCCAGGGcacgUUGGCcUCGCa -3'
miRNA:   3'- -UGUGGaUGUGGUUCU----AGCCGcGGCGc -5'
29391 3' -56.6 NC_006151.1 + 90249 0.66 0.87526
Target:  5'- -gGCCaGCGCCcagcccgcggcgAAGAcggCGGCGCCGaCGa -3'
miRNA:   3'- ugUGGaUGUGG------------UUCUa--GCCGCGGC-GC- -5'
29391 3' -56.6 NC_006151.1 + 89700 0.66 0.87526
Target:  5'- cCGCC-GCGuCCAGGAacccggCGGCGCCGg- -3'
miRNA:   3'- uGUGGaUGU-GGUUCUa-----GCCGCGGCgc -5'
29391 3' -56.6 NC_006151.1 + 88753 0.66 0.87526
Target:  5'- gACACCUcGC-CCGAGAcgUUGGCgacgGUCGCGc -3'
miRNA:   3'- -UGUGGA-UGuGGUUCU--AGCCG----CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 19043 0.66 0.87526
Target:  5'- cACGCCgggucCACCGGGcgCaggcacucgGGCGCgCGCGg -3'
miRNA:   3'- -UGUGGau---GUGGUUCuaG---------CCGCG-GCGC- -5'
29391 3' -56.6 NC_006151.1 + 2086 0.66 0.87526
Target:  5'- -gGCCUcCACCuuGAUgGGCccgagcggGCCGCGg -3'
miRNA:   3'- ugUGGAuGUGGuuCUAgCCG--------CGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 84802 0.66 0.874537
Target:  5'- gGCGCCcgagGCgACCGcggccgcGGA-CGGgGCCGCGa -3'
miRNA:   3'- -UGUGGa---UG-UGGU-------UCUaGCCgCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 120807 0.66 0.867935
Target:  5'- cGCGCC-GCGCgCGAGGUgcuggacGCGCCGCGc -3'
miRNA:   3'- -UGUGGaUGUG-GUUCUAgc-----CGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 89259 0.66 0.867935
Target:  5'- aGCGCCgu--CguGGucgaCGGCGCCGCGg -3'
miRNA:   3'- -UGUGGauguGguUCua--GCCGCGGCGC- -5'
29391 3' -56.6 NC_006151.1 + 38893 0.66 0.867935
Target:  5'- cCGCCUACugcccgcCCGAGGU-GGC-CCGCGc -3'
miRNA:   3'- uGUGGAUGu------GGUUCUAgCCGcGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.