miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29391 5' -56.8 NC_006151.1 + 75770 0.66 0.821702
Target:  5'- -uCACGGGCACgUCCG-CG--UGCGUg -3'
miRNA:   3'- guGUGCCCGUGgAGGCaGUugACGUA- -5'
29391 5' -56.8 NC_006151.1 + 136937 0.66 0.821702
Target:  5'- aGC-CGGGCGCCgacggcgCCGUC--CUGCGc -3'
miRNA:   3'- gUGuGCCCGUGGa------GGCAGuuGACGUa -5'
29391 5' -56.8 NC_006151.1 + 69465 0.67 0.812972
Target:  5'- -cCGCGGGCGCCggcaCCGUCGccGCcGCc- -3'
miRNA:   3'- guGUGCCCGUGGa---GGCAGU--UGaCGua -5'
29391 5' -56.8 NC_006151.1 + 71101 0.67 0.795018
Target:  5'- gGCGCGGGCGCCgugcgcuaccCCuUCuuccuGCUGCAg -3'
miRNA:   3'- gUGUGCCCGUGGa---------GGcAGu----UGACGUa -5'
29391 5' -56.8 NC_006151.1 + 39980 0.67 0.795018
Target:  5'- -cCGCGGGCGCC-CCGcCGGCcgUGCu- -3'
miRNA:   3'- guGUGCCCGUGGaGGCaGUUG--ACGua -5'
29391 5' -56.8 NC_006151.1 + 87175 0.67 0.785811
Target:  5'- cUACGCGcccgcGGCGCCgCCG-CAGCUGCu- -3'
miRNA:   3'- -GUGUGC-----CCGUGGaGGCaGUUGACGua -5'
29391 5' -56.8 NC_006151.1 + 100287 0.67 0.785811
Target:  5'- -cCGCGGGCgcacgGCCUCCGUCuuC-GCGc -3'
miRNA:   3'- guGUGCCCG-----UGGAGGCAGuuGaCGUa -5'
29391 5' -56.8 NC_006151.1 + 114091 0.67 0.785811
Target:  5'- gGCAUGGGCuacuaccuggGCCUCgG-CGGCUGCu- -3'
miRNA:   3'- gUGUGCCCG----------UGGAGgCaGUUGACGua -5'
29391 5' -56.8 NC_006151.1 + 126039 0.67 0.776463
Target:  5'- gACGUGGGCGCCgCCGUCGGCaagGUg- -3'
miRNA:   3'- gUGUGCCCGUGGaGGCAGUUGa--CGua -5'
29391 5' -56.8 NC_006151.1 + 24906 0.67 0.776463
Target:  5'- gACGCGG-C-CCUCCGagccCGACUGCAg -3'
miRNA:   3'- gUGUGCCcGuGGAGGCa---GUUGACGUa -5'
29391 5' -56.8 NC_006151.1 + 59361 0.67 0.766983
Target:  5'- gCGCACgGGGCGCCgcgcggCCGUCGuc-GCGUc -3'
miRNA:   3'- -GUGUG-CCCGUGGa-----GGCAGUugaCGUA- -5'
29391 5' -56.8 NC_006151.1 + 118551 0.68 0.737847
Target:  5'- gGCGCGGGCACggugUCCaUCAACggGCAc -3'
miRNA:   3'- gUGUGCCCGUGg---AGGcAGUUGa-CGUa -5'
29391 5' -56.8 NC_006151.1 + 131562 0.68 0.737847
Target:  5'- cCGCACGGGCcCCg-CGUCGcucaugguggucGCUGCGg -3'
miRNA:   3'- -GUGUGCCCGuGGagGCAGU------------UGACGUa -5'
29391 5' -56.8 NC_006151.1 + 70168 0.68 0.737847
Target:  5'- aGCGCGGGCGCgaagCgCGUCAucuGCUGCu- -3'
miRNA:   3'- gUGUGCCCGUGga--G-GCAGU---UGACGua -5'
29391 5' -56.8 NC_006151.1 + 103917 0.68 0.727934
Target:  5'- gCGCGCGGcCGCCguggaggagCCG-CAGCUGCAg -3'
miRNA:   3'- -GUGUGCCcGUGGa--------GGCaGUUGACGUa -5'
29391 5' -56.8 NC_006151.1 + 82618 0.68 0.727934
Target:  5'- gCGCGCGGGCGCCgCgGUgGGC-GCGg -3'
miRNA:   3'- -GUGUGCCCGUGGaGgCAgUUGaCGUa -5'
29391 5' -56.8 NC_006151.1 + 55351 0.68 0.727934
Target:  5'- gACaACGGGgGCCUCCGcgagCAGgUGCGc -3'
miRNA:   3'- gUG-UGCCCgUGGAGGCa---GUUgACGUa -5'
29391 5' -56.8 NC_006151.1 + 137995 0.69 0.686511
Target:  5'- aCGCACGcccGGCGCacgCCGUCAcgcgcguGCUGCAc -3'
miRNA:   3'- -GUGUGC---CCGUGga-GGCAGU-------UGACGUa -5'
29391 5' -56.8 NC_006151.1 + 137871 0.69 0.667013
Target:  5'- gCGCACGGGCGCagcCUG-CGGCUGCc- -3'
miRNA:   3'- -GUGUGCCCGUGga-GGCaGUUGACGua -5'
29391 5' -56.8 NC_006151.1 + 99328 0.69 0.656706
Target:  5'- cCugACGGacGCGCagcgcgCCGUCGGCUGCAc -3'
miRNA:   3'- -GugUGCC--CGUGga----GGCAGUUGACGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.