Results 41 - 60 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 17038 | 0.66 | 0.917906 |
Target: 5'- -gGCGACgAUCACGUccagggcGUCgGCGUCCGu -3' miRNA: 3'- gaUGCUGgUGGUGUA-------CAGgUGCGGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 87027 | 0.66 | 0.918478 |
Target: 5'- -aGCG-CCGCUACGacgaCUACGCCCAg -3' miRNA: 3'- gaUGCuGGUGGUGUaca-GGUGCGGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 92712 | 0.66 | 0.918478 |
Target: 5'- -cGCGAguucauCCAgCACGUGguggCCAUGCUCAc -3' miRNA: 3'- gaUGCU------GGUgGUGUACa---GGUGCGGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 82991 | 0.66 | 0.918478 |
Target: 5'- uCUGCG-CCGCCACGg--CCGCGgCgCAg -3' miRNA: 3'- -GAUGCuGGUGGUGUacaGGUGCgG-GU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 111312 | 0.66 | 0.918478 |
Target: 5'- -cGCGGCgGCCGCGUGcCCGgGCaCGg -3' miRNA: 3'- gaUGCUGgUGGUGUACaGGUgCGgGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 43017 | 0.66 | 0.912645 |
Target: 5'- gCUugGcACCccuCCACAUcUCCucgaucGCGCCCAg -3' miRNA: 3'- -GAugC-UGGu--GGUGUAcAGG------UGCGGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 38252 | 0.66 | 0.912645 |
Target: 5'- -cGCGGCCcucuucgccccgGCCaACGUGgCCGCGgCCCGg -3' miRNA: 3'- gaUGCUGG------------UGG-UGUACaGGUGC-GGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 50104 | 0.66 | 0.89372 |
Target: 5'- -cGCGAUCAgcuccgguCCGCG-GUgCGCGCCCGa -3' miRNA: 3'- gaUGCUGGU--------GGUGUaCAgGUGCGGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 57106 | 0.66 | 0.89372 |
Target: 5'- -cGCGAgCAgCGCGcGccgCCGCGCCCGg -3' miRNA: 3'- gaUGCUgGUgGUGUaCa--GGUGCGGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 58691 | 0.66 | 0.89372 |
Target: 5'- gUGCGcGCCgcGCCACAgcgccggGUCCgccaGCGCCCc -3' miRNA: 3'- gAUGC-UGG--UGGUGUa------CAGG----UGCGGGu -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 115676 | 0.66 | 0.894384 |
Target: 5'- --gUGGCCGCCACGgggaggcagGggagcagcccguuggCCACGCCCGu -3' miRNA: 3'- gauGCUGGUGGUGUa--------Ca--------------GGUGCGGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 83471 | 0.66 | 0.900263 |
Target: 5'- ---aGGCCGCCGCGcugaUGUCCccgacgaugaaGCGCgCCAg -3' miRNA: 3'- gaugCUGGUGGUGU----ACAGG-----------UGCG-GGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 1172 | 0.66 | 0.900263 |
Target: 5'- -cGgGACCACCaACAccGUCCACcuCCCAc -3' miRNA: 3'- gaUgCUGGUGG-UGUa-CAGGUGc-GGGU- -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 39793 | 0.66 | 0.900263 |
Target: 5'- -cGCGGCCaACCGCuggggGcUCgGCGCCCc -3' miRNA: 3'- gaUGCUGG-UGGUGua---C-AGgUGCGGGu -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 131242 | 0.66 | 0.900263 |
Target: 5'- --uCGGCCGCCACGUacagcuccccGUCggaccaCGCGCCCc -3' miRNA: 3'- gauGCUGGUGGUGUA----------CAG------GUGCGGGu -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 61726 | 0.66 | 0.906573 |
Target: 5'- -cACGGCCACCguGCugcUGgCgCACGCCCu -3' miRNA: 3'- gaUGCUGGUGG--UGu--ACaG-GUGCGGGu -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 6918 | 0.66 | 0.906573 |
Target: 5'- -cGCGuCUACUuuGCAUGUCCG-GCCCc -3' miRNA: 3'- gaUGCuGGUGG--UGUACAGGUgCGGGu -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 6999 | 0.66 | 0.906573 |
Target: 5'- -cGCGuCUACUuuGCAUGUCCG-GCCCc -3' miRNA: 3'- gaUGCuGGUGG--UGUACAGGUgCGGGu -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 69100 | 0.66 | 0.91145 |
Target: 5'- -gGCGuGCCGCCGCAccagcucccgCCGCGCCUc -3' miRNA: 3'- gaUGC-UGGUGGUGUaca-------GGUGCGGGu -5' |
|||||||
29393 | 3' | -55.7 | NC_006151.1 | + | 17252 | 0.66 | 0.912645 |
Target: 5'- -gAgGACCACUcCGUGUCCA-GCCgCGg -3' miRNA: 3'- gaUgCUGGUGGuGUACAGGUgCGG-GU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home