miRNA display CGI


Results 41 - 60 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29394 5' -59.4 NC_006151.1 + 97352 0.66 0.795038
Target:  5'- cGCGgggaagGCCGCggcggCgGCGgGCGCGgCGg -3'
miRNA:   3'- -CGCa-----CGGCGaa---GgUGCgCGCGCaGCg -5'
29394 5' -59.4 NC_006151.1 + 103761 0.66 0.795038
Target:  5'- aGCGcGCCGCgg-CGCuGCGCGaGUCGg -3'
miRNA:   3'- -CGCaCGGCGaagGUG-CGCGCgCAGCg -5'
29394 5' -59.4 NC_006151.1 + 117381 0.66 0.795038
Target:  5'- aCGUGCaCGg--CCACGCGCuuGcCGCa -3'
miRNA:   3'- cGCACG-GCgaaGGUGCGCGcgCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 60225 0.66 0.795038
Target:  5'- cGCGcGCCGgagccgUCCACGUacacgaagaGCuCGUCGCg -3'
miRNA:   3'- -CGCaCGGCga----AGGUGCG---------CGcGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 81371 0.66 0.795038
Target:  5'- gGCGggcGCCaGCgcgagCCGCGC-CGCGgCGCc -3'
miRNA:   3'- -CGCa--CGG-CGaa---GGUGCGcGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 83094 0.66 0.786194
Target:  5'- cGCGUGCaccucgaGCgggcgcCCGCGC-CG-GUCGCa -3'
miRNA:   3'- -CGCACGg------CGaa----GGUGCGcGCgCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 82000 0.66 0.786194
Target:  5'- gGCG-GCCaggGCggCCGCGUGCGC--CGCc -3'
miRNA:   3'- -CGCaCGG---CGaaGGUGCGCGCGcaGCG- -5'
29394 5' -59.4 NC_006151.1 + 119300 0.66 0.77722
Target:  5'- cGCGUGCUGCUgcaCACG-GC-C-UCGCa -3'
miRNA:   3'- -CGCACGGCGAag-GUGCgCGcGcAGCG- -5'
29394 5' -59.4 NC_006151.1 + 121265 0.66 0.77722
Target:  5'- gGCG-GCCGCgcuggcggagaUCaACGgGCGCGUgGCc -3'
miRNA:   3'- -CGCaCGGCGa----------AGgUGCgCGCGCAgCG- -5'
29394 5' -59.4 NC_006151.1 + 115937 0.66 0.77722
Target:  5'- cGCGcagGCCcg--CCGgGCGCGCGagCGCg -3'
miRNA:   3'- -CGCa--CGGcgaaGGUgCGCGCGCa-GCG- -5'
29394 5' -59.4 NC_006151.1 + 138005 0.66 0.77722
Target:  5'- gGCGcacGCCGU---CACGCGCGUGcUGCa -3'
miRNA:   3'- -CGCa--CGGCGaagGUGCGCGCGCaGCG- -5'
29394 5' -59.4 NC_006151.1 + 27135 0.66 0.780825
Target:  5'- gGCGaUGCCGCgaaagaggcggUUCACGUcggccccgaggcgccGCGUGUCGg -3'
miRNA:   3'- -CGC-ACGGCGa----------AGGUGCG---------------CGCGCAGCg -5'
29394 5' -59.4 NC_006151.1 + 100644 0.66 0.780825
Target:  5'- cGCGcugcGCCGCgccgUCgacgagcgcggcgugCugGCGCuCGUCGCg -3'
miRNA:   3'- -CGCa---CGGCGa---AG---------------GugCGCGcGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 63668 0.66 0.785303
Target:  5'- cCGgGUCGCUaaauagccagaccUCCgacuggGCGUGCGCGuUCGCg -3'
miRNA:   3'- cGCaCGGCGA-------------AGG------UGCGCGCGC-AGCG- -5'
29394 5' -59.4 NC_006151.1 + 112236 0.66 0.786194
Target:  5'- uCGUcGCCGCcgCCAgGCGCuGCGU-GUg -3'
miRNA:   3'- cGCA-CGGCGaaGGUgCGCG-CGCAgCG- -5'
29394 5' -59.4 NC_006151.1 + 20539 0.66 0.786194
Target:  5'- gGCGUccucgGCgGggUCCACGaCGCGCaggcuGUCGUg -3'
miRNA:   3'- -CGCA-----CGgCgaAGGUGC-GCGCG-----CAGCG- -5'
29394 5' -59.4 NC_006151.1 + 52923 0.66 0.786194
Target:  5'- aGCGUGaaGa--CCACaaacUGCGCGUCGCc -3'
miRNA:   3'- -CGCACggCgaaGGUGc---GCGCGCAGCG- -5'
29394 5' -59.4 NC_006151.1 + 58122 0.66 0.786194
Target:  5'- gGCGggGUCGCgucgCC-CGCGC-CGUaCGCg -3'
miRNA:   3'- -CGCa-CGGCGaa--GGuGCGCGcGCA-GCG- -5'
29394 5' -59.4 NC_006151.1 + 111262 0.66 0.786194
Target:  5'- aGCGagGCCGggaaCCGCGCGgGCGggggguaCGCg -3'
miRNA:   3'- -CGCa-CGGCgaa-GGUGCGCgCGCa------GCG- -5'
29394 5' -59.4 NC_006151.1 + 19154 0.66 0.786194
Target:  5'- aGCGUgGCgGUgaagUUCuCGCGCGaGUCGCc -3'
miRNA:   3'- -CGCA-CGgCGa---AGGuGCGCGCgCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.