miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 119797 0.68 0.954252
Target:  5'- --gUGACGGACcacgccggcuuccgGCACGCGCuGCGcgCUCu -3'
miRNA:   3'- caaACUGUCUG--------------UGUGUGCG-CGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 116320 0.68 0.951378
Target:  5'- --aUGAC-GcCGCGCuCGCGCGggCCCg -3'
miRNA:   3'- caaACUGuCuGUGUGuGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 54386 0.68 0.951378
Target:  5'- --aUGGCGcACcuGCGCGCGCGCGgCCUc -3'
miRNA:   3'- caaACUGUcUG--UGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 106548 0.68 0.947066
Target:  5'- ----uGCuGGCGCGCAUGUGCaUCCCc -3'
miRNA:   3'- caaacUGuCUGUGUGUGCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 129025 0.68 0.947066
Target:  5'- ---cGGCGucGGC-CGCGCGCGCGUacaCCu -3'
miRNA:   3'- caaaCUGU--CUGuGUGUGCGCGCAg--GG- -5'
29395 5' -52.3 NC_006151.1 + 136817 0.68 0.947066
Target:  5'- ---cGGCcGACGCGC-CGCGCGggCUCu -3'
miRNA:   3'- caaaCUGuCUGUGUGuGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 100919 0.68 0.947066
Target:  5'- ---cGAC-GACGCgaGCGCGgGCGUgCCCc -3'
miRNA:   3'- caaaCUGuCUGUG--UGUGCgCGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 63606 0.68 0.951378
Target:  5'- ----cACGGGCACccucaGCGCGCGCucgCCCg -3'
miRNA:   3'- caaacUGUCUGUG-----UGUGCGCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 115582 0.68 0.951378
Target:  5'- ---gGGCAGGuCGCGCucgagcagcuCGCGCGUggCCCa -3'
miRNA:   3'- caaaCUGUCU-GUGUGu---------GCGCGCA--GGG- -5'
29395 5' -52.3 NC_006151.1 + 57494 0.69 0.921794
Target:  5'- ---aGGC-GACGCGCACGCGCucggCCg -3'
miRNA:   3'- caaaCUGuCUGUGUGUGCGCGca--GGg -5'
29395 5' -52.3 NC_006151.1 + 95671 0.69 0.921794
Target:  5'- -cUUGACGG-CGCGCuCGC-CGUCCa -3'
miRNA:   3'- caAACUGUCuGUGUGuGCGcGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 137280 0.69 0.926805
Target:  5'- ----cGCGGGCACGCucgaggcggccauGCGCGgGUUCCg -3'
miRNA:   3'- caaacUGUCUGUGUG-------------UGCGCgCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 8286 0.69 0.927349
Target:  5'- ---aGAguGuccccGCGCGgGCGcCGCGUCCCg -3'
miRNA:   3'- caaaCUguC-----UGUGUgUGC-GCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 98370 0.69 0.927349
Target:  5'- ---gGGCucuGGGCGCGCGCGCuGCG-CCUg -3'
miRNA:   3'- caaaCUG---UCUGUGUGUGCG-CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 98223 0.69 0.927349
Target:  5'- ---cGGCGG-CGCcCGCGCGCGgaCCCu -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 103283 0.69 0.927349
Target:  5'- --cUGAgccaGGAgACGCGCGCGCGgCUCg -3'
miRNA:   3'- caaACUg---UCUgUGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 31769 0.69 0.932653
Target:  5'- ---cGGCGGGCGCGCGcCGgGCGgCUCu -3'
miRNA:   3'- caaaCUGUCUGUGUGU-GCgCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 67552 0.69 0.932653
Target:  5'- -gUUGACcaccacguGGCGCcCGCGgGCGUCCa -3'
miRNA:   3'- caAACUGu-------CUGUGuGUGCgCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 77104 0.69 0.932653
Target:  5'- ----cGCGGGCGCgGCGgGCGCGcgCCCa -3'
miRNA:   3'- caaacUGUCUGUG-UGUgCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 56675 0.69 0.921794
Target:  5'- ---cGACGG-CGC-CGCGCGCGcUCaCCg -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCGC-AG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.