Results 121 - 140 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 72185 | 0.69 | 0.903631 |
Target: 5'- ---gGAC-GAgGCACACGUG-GUCCCc -3' miRNA: 3'- caaaCUGuCUgUGUGUGCGCgCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 132109 | 0.69 | 0.903631 |
Target: 5'- ---aGGCcGGCGCGCACGaGCGgcaggCCCa -3' miRNA: 3'- caaaCUGuCUGUGUGUGCgCGCa----GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 21250 | 0.69 | 0.903631 |
Target: 5'- ---aGAUguAGACGCACACGCccaccaggaGCGcgCCCa -3' miRNA: 3'- caaaCUG--UCUGUGUGUGCG---------CGCa-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 132153 | 0.69 | 0.915989 |
Target: 5'- -gUUGACGG-CGCGCAgcUGCGCGgCCg -3' miRNA: 3'- caAACUGUCuGUGUGU--GCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 92749 | 0.69 | 0.920079 |
Target: 5'- ---cGGCGcGGCACggGCACcugagcgugcugcgGCGCGUCCCc -3' miRNA: 3'- caaaCUGU-CUGUG--UGUG--------------CGCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 118429 | 0.69 | 0.932653 |
Target: 5'- ---cGACGGGCGCGgaggugUGCGCGCGgCUCg -3' miRNA: 3'- caaaCUGUCUGUGU------GUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 77104 | 0.69 | 0.932653 |
Target: 5'- ----cGCGGGCGCgGCGgGCGCGcgCCCa -3' miRNA: 3'- caaacUGUCUGUG-UGUgCGCGCa-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 67552 | 0.69 | 0.932653 |
Target: 5'- -gUUGACcaccacguGGCGCcCGCGgGCGUCCa -3' miRNA: 3'- caAACUGu-------CUGUGuGUGCgCGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 31769 | 0.69 | 0.932653 |
Target: 5'- ---cGGCGGGCGCGCGcCGgGCGgCUCu -3' miRNA: 3'- caaaCUGUCUGUGUGU-GCgCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 103283 | 0.69 | 0.927349 |
Target: 5'- --cUGAgccaGGAgACGCGCGCGCGgCUCg -3' miRNA: 3'- caaACUg---UCUgUGUGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 98223 | 0.69 | 0.927349 |
Target: 5'- ---cGGCGG-CGCcCGCGCGCGgaCCCu -3' miRNA: 3'- caaaCUGUCuGUGuGUGCGCGCa-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 98370 | 0.69 | 0.927349 |
Target: 5'- ---gGGCucuGGGCGCGCGCGCuGCG-CCUg -3' miRNA: 3'- caaaCUG---UCUGUGUGUGCG-CGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 8286 | 0.69 | 0.927349 |
Target: 5'- ---aGAguGuccccGCGCGgGCGcCGCGUCCCg -3' miRNA: 3'- caaaCUguC-----UGUGUgUGC-GCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 137280 | 0.69 | 0.926805 |
Target: 5'- ----cGCGGGCACGCucgaggcggccauGCGCGgGUUCCg -3' miRNA: 3'- caaacUGUCUGUGUG-------------UGCGCgCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 95671 | 0.69 | 0.921794 |
Target: 5'- -cUUGACGG-CGCGCuCGC-CGUCCa -3' miRNA: 3'- caAACUGUCuGUGUGuGCGcGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 57494 | 0.69 | 0.921794 |
Target: 5'- ---aGGC-GACGCGCACGCGCucggCCg -3' miRNA: 3'- caaaCUGuCUGUGUGUGCGCGca--GGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 56675 | 0.69 | 0.921794 |
Target: 5'- ---cGACGG-CGC-CGCGCGCGcUCaCCg -3' miRNA: 3'- caaaCUGUCuGUGuGUGCGCGC-AG-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 119283 | 0.69 | 0.921794 |
Target: 5'- ---aGACGGACAaggACGgGCGCGUgCUg -3' miRNA: 3'- caaaCUGUCUGUg--UGUgCGCGCAgGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 66284 | 0.69 | 0.921225 |
Target: 5'- ---aGGCcuccucgAGGCGCACGCG-GCGcUCCCg -3' miRNA: 3'- caaaCUG-------UCUGUGUGUGCgCGC-AGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 111540 | 0.7 | 0.897083 |
Target: 5'- ---cGACAucauGGCGCGCAgcggcCGCGUGUCCa -3' miRNA: 3'- caaaCUGU----CUGUGUGU-----GCGCGCAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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