Results 141 - 160 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 71661 | 0.7 | 0.890293 |
Target: 5'- ---cGA-AGAUGCACACGCGCG-CCa -3' miRNA: 3'- caaaCUgUCUGUGUGUGCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 67865 | 0.7 | 0.890293 |
Target: 5'- ---cGGCgccgaGGugGCGCGCGCGCcagCCCg -3' miRNA: 3'- caaaCUG-----UCugUGUGUGCGCGca-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 38852 | 0.7 | 0.890293 |
Target: 5'- ---cGGCgAGACcCACACGCcGCGgCCCu -3' miRNA: 3'- caaaCUG-UCUGuGUGUGCG-CGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 27086 | 0.7 | 0.890293 |
Target: 5'- ---gGGCGcGGCGCaggGCGCGCGUGUCgCCc -3' miRNA: 3'- caaaCUGU-CUGUG---UGUGCGCGCAG-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 99614 | 0.7 | 0.883265 |
Target: 5'- ---gGGCuGGCGCACagcgccGCGCGCGaggCCCu -3' miRNA: 3'- caaaCUGuCUGUGUG------UGCGCGCa--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 71221 | 0.7 | 0.876003 |
Target: 5'- --gUGACcguGGGCGCGCGCGC-CGaCCCc -3' miRNA: 3'- caaACUG---UCUGUGUGUGCGcGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 73037 | 0.7 | 0.875264 |
Target: 5'- -aUUGGCGGugGCGCGgugggggUGCGCGgggUCCg -3' miRNA: 3'- caAACUGUCugUGUGU-------GCGCGCa--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 10290 | 0.7 | 0.868512 |
Target: 5'- ---aGGCGG-CGgGCACGUcccGCGUCCCc -3' miRNA: 3'- caaaCUGUCuGUgUGUGCG---CGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 98652 | 0.7 | 0.890293 |
Target: 5'- --cUGGCGGGCGCGCGCuccgccgaCGaCGUCCUg -3' miRNA: 3'- caaACUGUCUGUGUGUGc-------GC-GCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 139281 | 0.7 | 0.890293 |
Target: 5'- ---cGGCGGACGCGC-CGCccucgGCGUCUg -3' miRNA: 3'- caaaCUGUCUGUGUGuGCG-----CGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 133917 | 0.7 | 0.897083 |
Target: 5'- --cUGGCGG-CGCAgGCG-GCGUUCCa -3' miRNA: 3'- caaACUGUCuGUGUgUGCgCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 111540 | 0.7 | 0.897083 |
Target: 5'- ---cGACAucauGGCGCGCAgcggcCGCGUGUCCa -3' miRNA: 3'- caaaCUGU----CUGUGUGU-----GCGCGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 63906 | 0.7 | 0.897083 |
Target: 5'- ----aGCAGGCGCGCguACGCGCGcgCCg -3' miRNA: 3'- caaacUGUCUGUGUG--UGCGCGCa-GGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 128418 | 0.7 | 0.897083 |
Target: 5'- ---cGugAGGcCGCACACGCcgcucuuccaggGCGUCUCg -3' miRNA: 3'- caaaCugUCU-GUGUGUGCG------------CGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 114832 | 0.7 | 0.897083 |
Target: 5'- -gUUGAgGGGCACGC-CGUGCGcgaCCa -3' miRNA: 3'- caAACUgUCUGUGUGuGCGCGCag-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 106494 | 0.7 | 0.897083 |
Target: 5'- ---aGACGGGCcagcgGCugGCGCGCG-CCg -3' miRNA: 3'- caaaCUGUCUG-----UGugUGCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 78728 | 0.7 | 0.897083 |
Target: 5'- ---cGugGGGCGCGCGC-UGCGgCCCa -3' miRNA: 3'- caaaCugUCUGUGUGUGcGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 56303 | 0.7 | 0.897083 |
Target: 5'- ---aGGCGGACGC-CGCGCG-GUgCCu -3' miRNA: 3'- caaaCUGUCUGUGuGUGCGCgCAgGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 33290 | 0.7 | 0.890293 |
Target: 5'- ---cGACccuuccccgGGGCGCGCGCGCGUGggaCCg -3' miRNA: 3'- caaaCUG---------UCUGUGUGUGCGCGCag-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 135452 | 0.71 | 0.860799 |
Target: 5'- --cUGGCAGGCcugguagguGCGCGCcaGCGUGUCCg -3' miRNA: 3'- caaACUGUCUG---------UGUGUG--CGCGCAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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