Results 81 - 100 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 139281 | 0.7 | 0.890293 |
Target: 5'- ---cGGCGGACGCGC-CGCccucgGCGUCUg -3' miRNA: 3'- caaaCUGUCUGUGUGuGCG-----CGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 118466 | 0.69 | 0.909934 |
Target: 5'- ----cGCGGACGCGCACGCG-G-CCUa -3' miRNA: 3'- caaacUGUCUGUGUGUGCGCgCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 56027 | 0.69 | 0.903631 |
Target: 5'- ----cGguGACugACGCGCGCGUCg- -3' miRNA: 3'- caaacUguCUGugUGUGCGCGCAGgg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 132109 | 0.69 | 0.903631 |
Target: 5'- ---aGGCcGGCGCGCACGaGCGgcaggCCCa -3' miRNA: 3'- caaaCUGuCUGUGUGUGCgCGCa----GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 94703 | 0.69 | 0.906182 |
Target: 5'- ----cACGGACcacuGCGCGCGCuccagccgcgccacgGCGUCCCg -3' miRNA: 3'- caaacUGUCUG----UGUGUGCG---------------CGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 57494 | 0.69 | 0.921794 |
Target: 5'- ---aGGC-GACGCGCACGCGCucggCCg -3' miRNA: 3'- caaaCUGuCUGUGUGUGCGCGca--GGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 72185 | 0.69 | 0.903631 |
Target: 5'- ---gGAC-GAgGCACACGUG-GUCCCc -3' miRNA: 3'- caaaCUGuCUgUGUGUGCGCgCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 104477 | 0.69 | 0.909934 |
Target: 5'- ---gGGCGGACaugGCGCACGUGC--CCCg -3' miRNA: 3'- caaaCUGUCUG---UGUGUGCGCGcaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 95671 | 0.69 | 0.921794 |
Target: 5'- -cUUGACGG-CGCGCuCGC-CGUCCa -3' miRNA: 3'- caAACUGUCuGUGUGuGCGcGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 56675 | 0.69 | 0.921794 |
Target: 5'- ---cGACGG-CGC-CGCGCGCGcUCaCCg -3' miRNA: 3'- caaaCUGUCuGUGuGUGCGCGC-AG-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 92749 | 0.69 | 0.920079 |
Target: 5'- ---cGGCGcGGCACggGCACcugagcgugcugcgGCGCGUCCCc -3' miRNA: 3'- caaaCUGU-CUGUG--UGUG--------------CGCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 3105 | 0.69 | 0.915989 |
Target: 5'- ---cGAgAGGC-CGCcgcgGCGCGgGUCCCa -3' miRNA: 3'- caaaCUgUCUGuGUG----UGCGCgCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 132153 | 0.69 | 0.915989 |
Target: 5'- -gUUGACGG-CGCGCAgcUGCGCGgCCg -3' miRNA: 3'- caAACUGUCuGUGUGU--GCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 66284 | 0.69 | 0.921225 |
Target: 5'- ---aGGCcuccucgAGGCGCACGCG-GCGcUCCCg -3' miRNA: 3'- caaaCUG-------UCUGUGUGUGCgCGC-AGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 119283 | 0.69 | 0.921794 |
Target: 5'- ---aGACGGACAaggACGgGCGCGUgCUg -3' miRNA: 3'- caaaCUGUCUGUg--UGUgCGCGCAgGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 21250 | 0.69 | 0.903631 |
Target: 5'- ---aGAUguAGACGCACACGCccaccaggaGCGcgCCCa -3' miRNA: 3'- caaaCUG--UCUGUGUGUGCG---------CGCa-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 83319 | 0.69 | 0.903631 |
Target: 5'- -gUUGcGCAGGgccgugaGCAgGCGCGCGUCCa -3' miRNA: 3'- caAAC-UGUCUg------UGUgUGCGCGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 10497 | 0.69 | 0.903631 |
Target: 5'- ---cGGCGcGCGCccgccgccGCAgGCGCGUCCCc -3' miRNA: 3'- caaaCUGUcUGUG--------UGUgCGCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 61302 | 0.69 | 0.903631 |
Target: 5'- ---cGACGGGCGCGuCGCGCuGCagGUCCa -3' miRNA: 3'- caaaCUGUCUGUGU-GUGCG-CG--CAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 93370 | 0.69 | 0.903631 |
Target: 5'- --aUGACggccggAGGCGCGCGCuaGUGUCUCa -3' miRNA: 3'- caaACUG------UCUGUGUGUGcgCGCAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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