miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 93370 0.69 0.903631
Target:  5'- --aUGACggccggAGGCGCGCGCuaGUGUCUCa -3'
miRNA:   3'- caaACUG------UCUGUGUGUGcgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 132153 0.69 0.915989
Target:  5'- -gUUGACGG-CGCGCAgcUGCGCGgCCg -3'
miRNA:   3'- caAACUGUCuGUGUGU--GCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 21250 0.69 0.903631
Target:  5'- ---aGAUguAGACGCACACGCccaccaggaGCGcgCCCa -3'
miRNA:   3'- caaaCUG--UCUGUGUGUGCG---------CGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 92749 0.69 0.920079
Target:  5'- ---cGGCGcGGCACggGCACcugagcgugcugcgGCGCGUCCCc -3'
miRNA:   3'- caaaCUGU-CUGUG--UGUG--------------CGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 66284 0.69 0.921225
Target:  5'- ---aGGCcuccucgAGGCGCACGCG-GCGcUCCCg -3'
miRNA:   3'- caaaCUG-------UCUGUGUGUGCgCGC-AGGG- -5'
29395 5' -52.3 NC_006151.1 + 94703 0.69 0.906182
Target:  5'- ----cACGGACcacuGCGCGCGCuccagccgcgccacgGCGUCCCg -3'
miRNA:   3'- caaacUGUCUG----UGUGUGCG---------------CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 56027 0.69 0.903631
Target:  5'- ----cGguGACugACGCGCGCGUCg- -3'
miRNA:   3'- caaacUguCUGugUGUGCGCGCAGgg -5'
29395 5' -52.3 NC_006151.1 + 10497 0.69 0.903631
Target:  5'- ---cGGCGcGCGCccgccgccGCAgGCGCGUCCCc -3'
miRNA:   3'- caaaCUGUcUGUG--------UGUgCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 72185 0.69 0.903631
Target:  5'- ---gGAC-GAgGCACACGUG-GUCCCc -3'
miRNA:   3'- caaaCUGuCUgUGUGUGCGCgCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 132109 0.69 0.903631
Target:  5'- ---aGGCcGGCGCGCACGaGCGgcaggCCCa -3'
miRNA:   3'- caaaCUGuCUGUGUGUGCgCGCa----GGG- -5'
29395 5' -52.3 NC_006151.1 + 52397 0.69 0.915989
Target:  5'- ---cGGCGGGCGC-CGC-CGCG-CCCg -3'
miRNA:   3'- caaaCUGUCUGUGuGUGcGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 37968 0.68 0.936216
Target:  5'- --cUGGCGGACGCcugcguccuggccuGC-CGCGgCGUCCUc -3'
miRNA:   3'- caaACUGUCUGUG--------------UGuGCGC-GCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 121993 0.68 0.94251
Target:  5'- ---gGGCGGcGCGugccgcuucCACGCGCGCGUCgCg -3'
miRNA:   3'- caaaCUGUC-UGU---------GUGUGCGCGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 68767 0.68 0.94251
Target:  5'- ---cGGCGGugGCGCGCGCgGCGaggugCgCCg -3'
miRNA:   3'- caaaCUGUCugUGUGUGCG-CGCa----G-GG- -5'
29395 5' -52.3 NC_006151.1 + 49930 0.68 0.94251
Target:  5'- --cUGACGGACACGauccgccgggacCugGCcGCGgCCCu -3'
miRNA:   3'- caaACUGUCUGUGU------------GugCG-CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 15196 0.68 0.94251
Target:  5'- cUUUGACuuuuacgccauGGGCuACACGCGCcaGCGcCCCu -3'
miRNA:   3'- cAAACUG-----------UCUG-UGUGUGCG--CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 138331 0.68 0.94251
Target:  5'- ----uGCGGGCccgGCACGCGCGCaG-CCCg -3'
miRNA:   3'- caaacUGUCUG---UGUGUGCGCG-CaGGG- -5'
29395 5' -52.3 NC_006151.1 + 60403 0.68 0.94251
Target:  5'- ---aGACgaGGGCGCGCACGgcccaGCGgCCCa -3'
miRNA:   3'- caaaCUG--UCUGUGUGUGCg----CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 132798 0.68 0.937706
Target:  5'- --cUGAUgAGGCGCugGuacaGCGCGUCCg -3'
miRNA:   3'- caaACUG-UCUGUGugUg---CGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 52153 0.68 0.937706
Target:  5'- ------gAGACGCugucCACGUGCGUCUCg -3'
miRNA:   3'- caaacugUCUGUGu---GUGCGCGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.