miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 135452 0.71 0.860799
Target:  5'- --cUGGCAGGCcugguagguGCGCGCcaGCGUGUCCg -3'
miRNA:   3'- caaACUGUCUG---------UGUGUG--CGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 10290 0.7 0.868512
Target:  5'- ---aGGCGG-CGgGCACGUcccGCGUCCCc -3'
miRNA:   3'- caaaCUGUCuGUgUGUGCG---CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 73037 0.7 0.875264
Target:  5'- -aUUGGCGGugGCGCGgugggggUGCGCGgggUCCg -3'
miRNA:   3'- caAACUGUCugUGUGU-------GCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 71221 0.7 0.876003
Target:  5'- --gUGACcguGGGCGCGCGCGC-CGaCCCc -3'
miRNA:   3'- caaACUG---UCUGUGUGUGCGcGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 99614 0.7 0.883265
Target:  5'- ---gGGCuGGCGCACagcgccGCGCGCGaggCCCu -3'
miRNA:   3'- caaaCUGuCUGUGUG------UGCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 67865 0.7 0.890293
Target:  5'- ---cGGCgccgaGGugGCGCGCGCGCcagCCCg -3'
miRNA:   3'- caaaCUG-----UCugUGUGUGCGCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 71661 0.7 0.890293
Target:  5'- ---cGA-AGAUGCACACGCGCG-CCa -3'
miRNA:   3'- caaaCUgUCUGUGUGUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 81842 0.7 0.890293
Target:  5'- --aUGAgCAGGCGCGagagcagGCGCGCGUCgCu -3'
miRNA:   3'- caaACU-GUCUGUGUg------UGCGCGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 98652 0.7 0.890293
Target:  5'- --cUGGCGGGCGCGCGCuccgccgaCGaCGUCCUg -3'
miRNA:   3'- caaACUGUCUGUGUGUGc-------GC-GCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 139281 0.7 0.890293
Target:  5'- ---cGGCGGACGCGC-CGCccucgGCGUCUg -3'
miRNA:   3'- caaaCUGUCUGUGUGuGCG-----CGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 33290 0.7 0.890293
Target:  5'- ---cGACccuuccccgGGGCGCGCGCGCGUGggaCCg -3'
miRNA:   3'- caaaCUG---------UCUGUGUGUGCGCGCag-GG- -5'
29395 5' -52.3 NC_006151.1 + 27086 0.7 0.890293
Target:  5'- ---gGGCGcGGCGCaggGCGCGCGUGUCgCCc -3'
miRNA:   3'- caaaCUGU-CUGUG---UGUGCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 38852 0.7 0.890293
Target:  5'- ---cGGCgAGACcCACACGCcGCGgCCCu -3'
miRNA:   3'- caaaCUG-UCUGuGUGUGCG-CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 56303 0.7 0.897083
Target:  5'- ---aGGCGGACGC-CGCGCG-GUgCCu -3'
miRNA:   3'- caaaCUGUCUGUGuGUGCGCgCAgGG- -5'
29395 5' -52.3 NC_006151.1 + 78728 0.7 0.897083
Target:  5'- ---cGugGGGCGCGCGC-UGCGgCCCa -3'
miRNA:   3'- caaaCugUCUGUGUGUGcGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 106494 0.7 0.897083
Target:  5'- ---aGACGGGCcagcgGCugGCGCGCG-CCg -3'
miRNA:   3'- caaaCUGUCUG-----UGugUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 114832 0.7 0.897083
Target:  5'- -gUUGAgGGGCACGC-CGUGCGcgaCCa -3'
miRNA:   3'- caAACUgUCUGUGUGuGCGCGCag-GG- -5'
29395 5' -52.3 NC_006151.1 + 128418 0.7 0.897083
Target:  5'- ---cGugAGGcCGCACACGCcgcucuuccaggGCGUCUCg -3'
miRNA:   3'- caaaCugUCU-GUGUGUGCG------------CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 111540 0.7 0.897083
Target:  5'- ---cGACAucauGGCGCGCAgcggcCGCGUGUCCa -3'
miRNA:   3'- caaaCUGU----CUGUGUGU-----GCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 133917 0.7 0.897083
Target:  5'- --cUGGCGG-CGCAgGCG-GCGUUCCa -3'
miRNA:   3'- caaACUGUCuGUGUgUGCgCGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.