Results 141 - 160 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 96501 | 0.68 | 0.955448 |
Target: 5'- -cUUGccGCAGGCcacguACACGCGCuCGUCCa -3' miRNA: 3'- caAAC--UGUCUG-----UGUGUGCGcGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 98713 | 0.68 | 0.955448 |
Target: 5'- ---aGACGG-CGCGCGCGCuCGUgcagcCCCg -3' miRNA: 3'- caaaCUGUCuGUGUGUGCGcGCA-----GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 59678 | 0.68 | 0.955842 |
Target: 5'- ---gGACGcGCGCGCACGCGCcgagcacggccaggCCCa -3' miRNA: 3'- caaaCUGUcUGUGUGUGCGCGca------------GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 21488 | 0.67 | 0.958907 |
Target: 5'- ---gGGCAGGCggccgggGgGCGCGgGCGUCaCCg -3' miRNA: 3'- caaaCUGUCUG-------UgUGUGCgCGCAG-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 88770 | 0.67 | 0.95928 |
Target: 5'- -gUUGGC-GACGguCGCGCGCucgCCCu -3' miRNA: 3'- caAACUGuCUGUguGUGCGCGca-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 111348 | 0.67 | 0.95928 |
Target: 5'- gGUcgGGCGGAUGgGCGCGCGgGgcgagggCCCc -3' miRNA: 3'- -CAaaCUGUCUGUgUGUGCGCgCa------GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 93673 | 0.67 | 0.95928 |
Target: 5'- ---aGGCuGuCGCGCgggGCGCGCG-CCCg -3' miRNA: 3'- caaaCUGuCuGUGUG---UGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 68294 | 0.67 | 0.95928 |
Target: 5'- ---cGGCGG-C-CAgGCGCGCG-CCCa -3' miRNA: 3'- caaaCUGUCuGuGUgUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 52175 | 0.67 | 0.95928 |
Target: 5'- ---cGAaGGGCGCGCGCGCgaacGCGgCCCc -3' miRNA: 3'- caaaCUgUCUGUGUGUGCG----CGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 53332 | 0.67 | 0.95928 |
Target: 5'- ----cACAGACgagcacgggGCGCGCGCGCG-CCg -3' miRNA: 3'- caaacUGUCUG---------UGUGUGCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 73252 | 0.67 | 0.95928 |
Target: 5'- ---aGACGGGCACGgGCGCcagGCGguugCCg -3' miRNA: 3'- caaaCUGUCUGUGUgUGCG---CGCa---GGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 132841 | 0.67 | 0.95928 |
Target: 5'- ---gGACGGcCAC-CACGgGCGgccggCCCg -3' miRNA: 3'- caaaCUGUCuGUGuGUGCgCGCa----GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 20769 | 0.67 | 0.95928 |
Target: 5'- ---cGGCGGACGCGCGcCGgGCGagcggCUCg -3' miRNA: 3'- caaaCUGUCUGUGUGU-GCgCGCa----GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 116124 | 0.67 | 0.962879 |
Target: 5'- -cUUGuCGGGCAgCACGaagcCGCGCGagCCCg -3' miRNA: 3'- caAACuGUCUGU-GUGU----GCGCGCa-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 130305 | 0.67 | 0.962879 |
Target: 5'- ---cGACGG-CGCggaGCGCGCGCG-CCg -3' miRNA: 3'- caaaCUGUCuGUG---UGUGCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 33928 | 0.67 | 0.962879 |
Target: 5'- ---gGGCGGAUcgAgGCcCGCGCGcCCCg -3' miRNA: 3'- caaaCUGUCUG--UgUGuGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 28255 | 0.67 | 0.962879 |
Target: 5'- -aUUGGCcgGGGCcuCACACGUGgGcCCCg -3' miRNA: 3'- caAACUG--UCUGu-GUGUGCGCgCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 57088 | 0.67 | 0.964255 |
Target: 5'- ----cGCAGGCGCACgcagcgccgcgagcaGCGCGCGcCgCCg -3' miRNA: 3'- caaacUGUCUGUGUG---------------UGCGCGCaG-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 88978 | 0.67 | 0.966251 |
Target: 5'- ---aGACGG-CGCACcCGaagcugacCGCGUCCCc -3' miRNA: 3'- caaaCUGUCuGUGUGuGC--------GCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 99985 | 0.67 | 0.966251 |
Target: 5'- --gUGGCGG-CGCugGCGCGCGa--- -3' miRNA: 3'- caaACUGUCuGUGugUGCGCGCaggg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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