miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 98713 0.68 0.955448
Target:  5'- ---aGACGG-CGCGCGCGCuCGUgcagcCCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGUGCGcGCA-----GGG- -5'
29395 5' -52.3 NC_006151.1 + 68606 0.68 0.955052
Target:  5'- ---cGACGcgccucggaagcGACACGCGaacugccCGCGCGUCgCCg -3'
miRNA:   3'- caaaCUGU------------CUGUGUGU-------GCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 57233 0.68 0.955052
Target:  5'- ----cGCAGGCgGCGCGCGCggccucgGCGUCCg -3'
miRNA:   3'- caaacUGUCUG-UGUGUGCG-------CGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 119797 0.68 0.954252
Target:  5'- --gUGACGGACcacgccggcuuccgGCACGCGCuGCGcgCUCu -3'
miRNA:   3'- caaACUGUCUG--------------UGUGUGCG-CGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 63606 0.68 0.951378
Target:  5'- ----cACGGGCACccucaGCGCGCGCucgCCCg -3'
miRNA:   3'- caaacUGUCUGUG-----UGUGCGCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 115582 0.68 0.951378
Target:  5'- ---gGGCAGGuCGCGCucgagcagcuCGCGCGUggCCCa -3'
miRNA:   3'- caaaCUGUCU-GUGUGu---------GCGCGCA--GGG- -5'
29395 5' -52.3 NC_006151.1 + 54386 0.68 0.951378
Target:  5'- --aUGGCGcACcuGCGCGCGCGCGgCCUc -3'
miRNA:   3'- caaACUGUcUG--UGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 116320 0.68 0.951378
Target:  5'- --aUGAC-GcCGCGCuCGCGCGggCCCg -3'
miRNA:   3'- caaACUGuCuGUGUGuGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 51122 0.68 0.947066
Target:  5'- ----uGCGGGCcuCGCGCaGgGCGUCCCg -3'
miRNA:   3'- caaacUGUCUGu-GUGUG-CgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 126515 0.68 0.947066
Target:  5'- uGUUUGGCA---ACACGuCuCGCGUCCCu -3'
miRNA:   3'- -CAAACUGUcugUGUGU-GcGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 59245 0.68 0.947066
Target:  5'- ---cGGCcGACGCGCACGC-CGaaggccuccUCCCa -3'
miRNA:   3'- caaaCUGuCUGUGUGUGCGcGC---------AGGG- -5'
29395 5' -52.3 NC_006151.1 + 81579 0.68 0.947066
Target:  5'- ----aGCAGGguCuCGCGCGCGUCgCCg -3'
miRNA:   3'- caaacUGUCUguGuGUGCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 83003 0.68 0.947066
Target:  5'- ---cGGCcgcGGCGCAgACGCGCGgcgagggCCCc -3'
miRNA:   3'- caaaCUGu--CUGUGUgUGCGCGCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 88372 0.68 0.947066
Target:  5'- ----cGCAGGCucgGCGCGaGCGCGUCCg -3'
miRNA:   3'- caaacUGUCUG---UGUGUgCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 106548 0.68 0.947066
Target:  5'- ----uGCuGGCGCGCAUGUGCaUCCCc -3'
miRNA:   3'- caaacUGuCUGUGUGUGCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 129025 0.68 0.947066
Target:  5'- ---cGGCGucGGC-CGCGCGCGCGUacaCCu -3'
miRNA:   3'- caaaCUGU--CUGuGUGUGCGCGCAg--GG- -5'
29395 5' -52.3 NC_006151.1 + 136817 0.68 0.947066
Target:  5'- ---cGGCcGACGCGC-CGCGCGggCUCu -3'
miRNA:   3'- caaaCUGuCUGUGUGuGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 100919 0.68 0.947066
Target:  5'- ---cGAC-GACGCgaGCGCGgGCGUgCCCc -3'
miRNA:   3'- caaaCUGuCUGUG--UGUGCgCGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 133156 0.68 0.946622
Target:  5'- ---cGGCGGcgGCGCGgGCGUgggccucggccacGCGUCCCa -3'
miRNA:   3'- caaaCUGUC--UGUGUgUGCG-------------CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 68767 0.68 0.94251
Target:  5'- ---cGGCGGugGCGCGCGCgGCGaggugCgCCg -3'
miRNA:   3'- caaaCUGUCugUGUGUGCG-CGCa----G-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.