miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 138331 0.68 0.94251
Target:  5'- ----uGCGGGCccgGCACGCGCGCaG-CCCg -3'
miRNA:   3'- caaacUGUCUG---UGUGUGCGCG-CaGGG- -5'
29395 5' -52.3 NC_006151.1 + 15196 0.68 0.94251
Target:  5'- cUUUGACuuuuacgccauGGGCuACACGCGCcaGCGcCCCu -3'
miRNA:   3'- cAAACUG-----------UCUG-UGUGUGCG--CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 49930 0.68 0.94251
Target:  5'- --cUGACGGACACGauccgccgggacCugGCcGCGgCCCu -3'
miRNA:   3'- caaACUGUCUGUGU------------GugCG-CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 68767 0.68 0.94251
Target:  5'- ---cGGCGGugGCGCGCGCgGCGaggugCgCCg -3'
miRNA:   3'- caaaCUGUCugUGUGUGCG-CGCa----G-GG- -5'
29395 5' -52.3 NC_006151.1 + 121993 0.68 0.94251
Target:  5'- ---gGGCGGcGCGugccgcuucCACGCGCGCGUCgCg -3'
miRNA:   3'- caaaCUGUC-UGU---------GUGUGCGCGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 52153 0.68 0.937706
Target:  5'- ------gAGACGCugucCACGUGCGUCUCg -3'
miRNA:   3'- caaacugUCUGUGu---GUGCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 132798 0.68 0.937706
Target:  5'- --cUGAUgAGGCGCugGuacaGCGCGUCCg -3'
miRNA:   3'- caaACUG-UCUGUGugUg---CGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 76958 0.68 0.937706
Target:  5'- ----cGCAGACGgcCGCGCGCGCGUagaaggCCa -3'
miRNA:   3'- caaacUGUCUGU--GUGUGCGCGCAg-----GG- -5'
29395 5' -52.3 NC_006151.1 + 37968 0.68 0.936216
Target:  5'- --cUGGCGGACGCcugcguccuggccuGC-CGCGgCGUCCUc -3'
miRNA:   3'- caaACUGUCUGUG--------------UGuGCGC-GCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 118429 0.69 0.932653
Target:  5'- ---cGACGGGCGCGgaggugUGCGCGCGgCUCg -3'
miRNA:   3'- caaaCUGUCUGUGU------GUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 77104 0.69 0.932653
Target:  5'- ----cGCGGGCGCgGCGgGCGCGcgCCCa -3'
miRNA:   3'- caaacUGUCUGUG-UGUgCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 67552 0.69 0.932653
Target:  5'- -gUUGACcaccacguGGCGCcCGCGgGCGUCCa -3'
miRNA:   3'- caAACUGu-------CUGUGuGUGCgCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 31769 0.69 0.932653
Target:  5'- ---cGGCGGGCGCGCGcCGgGCGgCUCu -3'
miRNA:   3'- caaaCUGUCUGUGUGU-GCgCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 8286 0.69 0.927349
Target:  5'- ---aGAguGuccccGCGCGgGCGcCGCGUCCCg -3'
miRNA:   3'- caaaCUguC-----UGUGUgUGC-GCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 98370 0.69 0.927349
Target:  5'- ---gGGCucuGGGCGCGCGCGCuGCG-CCUg -3'
miRNA:   3'- caaaCUG---UCUGUGUGUGCG-CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 98223 0.69 0.927349
Target:  5'- ---cGGCGG-CGCcCGCGCGCGgaCCCu -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 103283 0.69 0.927349
Target:  5'- --cUGAgccaGGAgACGCGCGCGCGgCUCg -3'
miRNA:   3'- caaACUg---UCUgUGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 137280 0.69 0.926805
Target:  5'- ----cGCGGGCACGCucgaggcggccauGCGCGgGUUCCg -3'
miRNA:   3'- caaacUGUCUGUGUG-------------UGCGCgCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 57494 0.69 0.921794
Target:  5'- ---aGGC-GACGCGCACGCGCucggCCg -3'
miRNA:   3'- caaaCUGuCUGUGUGUGCGCGca--GGg -5'
29395 5' -52.3 NC_006151.1 + 56675 0.69 0.921794
Target:  5'- ---cGACGG-CGC-CGCGCGCGcUCaCCg -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCGC-AG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.