Results 161 - 180 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 135452 | 0.71 | 0.860799 |
Target: 5'- --cUGGCAGGCcugguagguGCGCGCcaGCGUGUCCg -3' miRNA: 3'- caaACUGUCUG---------UGUGUG--CGCGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 10818 | 0.71 | 0.860799 |
Target: 5'- ----cACAuACACACACGCGCGcgcacCCCg -3' miRNA: 3'- caaacUGUcUGUGUGUGCGCGCa----GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 13114 | 0.71 | 0.852868 |
Target: 5'- ---cGGCGGGuCACGCGCGCucccGCGacuUCCCg -3' miRNA: 3'- caaaCUGUCU-GUGUGUGCG----CGC---AGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 88686 | 0.71 | 0.852868 |
Target: 5'- -gUUGGCGGACAgCACGCGCcacGUGUagacgCCCu -3' miRNA: 3'- caAACUGUCUGU-GUGUGCG---CGCA-----GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 132487 | 0.71 | 0.852868 |
Target: 5'- ----aGCAGGCGCGCGuagcgcuccuCGCGCG-CCCg -3' miRNA: 3'- caaacUGUCUGUGUGU----------GCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 91571 | 0.71 | 0.844728 |
Target: 5'- --aUGGCGG-CGCGCGCGUGC-UCCa -3' miRNA: 3'- caaACUGUCuGUGUGUGCGCGcAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 50003 | 0.71 | 0.844728 |
Target: 5'- cGUUUG-CGcGC-CGCGCGCGCGgCCCg -3' miRNA: 3'- -CAAACuGUcUGuGUGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 84774 | 0.71 | 0.844728 |
Target: 5'- ---aGGCGGACGCG-GCGCGCGcCgCCg -3' miRNA: 3'- caaaCUGUCUGUGUgUGCGCGCaG-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 142922 | 0.71 | 0.844728 |
Target: 5'- ---gGGCAccGACACcguccccaccACACGCGCG-CCCg -3' miRNA: 3'- caaaCUGU--CUGUG----------UGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 74907 | 0.71 | 0.843903 |
Target: 5'- --aUGcCGGucCACGCugagcucgaagccGCGCGCGUCCCu -3' miRNA: 3'- caaACuGUCu-GUGUG-------------UGCGCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 102393 | 0.71 | 0.836385 |
Target: 5'- --cUGGCGcuggucgcGGCGCGCGuCGCGCGgCCCg -3' miRNA: 3'- caaACUGU--------CUGUGUGU-GCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 84426 | 0.71 | 0.827848 |
Target: 5'- ---aGGCGG-CGCGCggcgGCGCGCGgCCCa -3' miRNA: 3'- caaaCUGUCuGUGUG----UGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 8957 | 0.71 | 0.827848 |
Target: 5'- -----cCGGuccCACGCGCGCGCGcCCCg -3' miRNA: 3'- caaacuGUCu--GUGUGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 139256 | 0.72 | 0.819124 |
Target: 5'- ---cGACGGcCACGCcCGCGCGcUCCg -3' miRNA: 3'- caaaCUGUCuGUGUGuGCGCGC-AGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 25408 | 0.72 | 0.819124 |
Target: 5'- ---cGACGGGgGCGCcgccgccccACGCGCG-CCCg -3' miRNA: 3'- caaaCUGUCUgUGUG---------UGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 95281 | 0.72 | 0.819124 |
Target: 5'- -gUUGACgaAGACggcgGCgACGCGCGCGgCCCg -3' miRNA: 3'- caAACUG--UCUG----UG-UGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 141745 | 0.72 | 0.819124 |
Target: 5'- ---gGAgGGGCGCgGgGCGCGCGcCCCg -3' miRNA: 3'- caaaCUgUCUGUG-UgUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 138114 | 0.72 | 0.810221 |
Target: 5'- --cUGGCGGACAUGC-UGCGCGgCCUg -3' miRNA: 3'- caaACUGUCUGUGUGuGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 102568 | 0.72 | 0.810221 |
Target: 5'- uGUUUGcGCGcGCcCGCGCGCGCGagUCCCg -3' miRNA: 3'- -CAAAC-UGUcUGuGUGUGCGCGC--AGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 95445 | 0.72 | 0.810221 |
Target: 5'- ---gGGCGG-CGC-CGCGCGUGUCCg -3' miRNA: 3'- caaaCUGUCuGUGuGUGCGCGCAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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