miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 56675 0.69 0.921794
Target:  5'- ---cGACGG-CGC-CGCGCGCGcUCaCCg -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCGC-AG-GG- -5'
29395 5' -52.3 NC_006151.1 + 57088 0.67 0.964255
Target:  5'- ----cGCAGGCGCACgcagcgccgcgagcaGCGCGCGcCgCCg -3'
miRNA:   3'- caaacUGUCUGUGUG---------------UGCGCGCaG-GG- -5'
29395 5' -52.3 NC_006151.1 + 57131 0.66 0.981855
Target:  5'- ---cGGCGGucGCcccuGCGCACGCggcgggggcgaggGCGUCCCc -3'
miRNA:   3'- caaaCUGUC--UG----UGUGUGCG-------------CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 57233 0.68 0.955052
Target:  5'- ----cGCAGGCgGCGCGCGCggccucgGCGUCCg -3'
miRNA:   3'- caaacUGUCUG-UGUGUGCG-------CGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 57494 0.69 0.921794
Target:  5'- ---aGGC-GACGCGCACGCGCucggCCg -3'
miRNA:   3'- caaaCUGuCUGUGUGUGCGCGca--GGg -5'
29395 5' -52.3 NC_006151.1 + 58446 0.74 0.703184
Target:  5'- --gUGGCGuGCGCGCGCGCgGCGUCgCg -3'
miRNA:   3'- caaACUGUcUGUGUGUGCG-CGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 58905 0.72 0.791916
Target:  5'- ---cGGCc-GCGCACACGCGC-UCCCc -3'
miRNA:   3'- caaaCUGucUGUGUGUGCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 58986 0.67 0.972335
Target:  5'- ----cGCGGGCACGagcgagaGCGCGgCGUCCa -3'
miRNA:   3'- caaacUGUCUGUGUg------UGCGC-GCAGGg -5'
29395 5' -52.3 NC_006151.1 + 59196 0.66 0.97506
Target:  5'- -cUUGcGCAGGuucuuCACGCGCGUGgGcCCCg -3'
miRNA:   3'- caAAC-UGUCU-----GUGUGUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 59245 0.68 0.947066
Target:  5'- ---cGGCcGACGCGCACGC-CGaaggccuccUCCCa -3'
miRNA:   3'- caaaCUGuCUGUGUGUGCGcGC---------AGGG- -5'
29395 5' -52.3 NC_006151.1 + 59678 0.68 0.955842
Target:  5'- ---gGACGcGCGCGCACGCGCcgagcacggccaggCCCa -3'
miRNA:   3'- caaaCUGUcUGUGUGUGCGCGca------------GGG- -5'
29395 5' -52.3 NC_006151.1 + 59886 0.68 0.955448
Target:  5'- --cUGGCgaAGGCGucCAgGCGCGCGUCgCg -3'
miRNA:   3'- caaACUG--UCUGU--GUgUGCGCGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 60155 0.66 0.982061
Target:  5'- ---cGACAGGCGCGC-CG-GCcagCCCg -3'
miRNA:   3'- caaaCUGUCUGUGUGuGCgCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 60403 0.68 0.94251
Target:  5'- ---aGACgaGGGCGCGCACGgcccaGCGgCCCa -3'
miRNA:   3'- caaaCUG--UCUGUGUGUGCg----CGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 61302 0.69 0.903631
Target:  5'- ---cGACGGGCGCGuCGCGCuGCagGUCCa -3'
miRNA:   3'- caaaCUGUCUGUGU-GUGCG-CG--CAGGg -5'
29395 5' -52.3 NC_006151.1 + 62053 0.75 0.651222
Target:  5'- --gUGGCGGuGCACGCGCGCGcCGUCg- -3'
miRNA:   3'- caaACUGUC-UGUGUGUGCGC-GCAGgg -5'
29395 5' -52.3 NC_006151.1 + 62359 0.66 0.98287
Target:  5'- ---gGGgAGACGCACggcgucgucaucgggACGCGCGccgUCCUg -3'
miRNA:   3'- caaaCUgUCUGUGUG---------------UGCGCGC---AGGG- -5'
29395 5' -52.3 NC_006151.1 + 63324 0.67 0.971477
Target:  5'- ----cGCGGugACGCgaaaggccuccucgGCGCGCG-CCCg -3'
miRNA:   3'- caaacUGUCugUGUG--------------UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 63606 0.68 0.951378
Target:  5'- ----cACGGGCACccucaGCGCGCGCucgCCCg -3'
miRNA:   3'- caaacUGUCUGUG-----UGUGCGCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 63906 0.7 0.897083
Target:  5'- ----aGCAGGCGCGCguACGCGCGcgCCg -3'
miRNA:   3'- caaacUGUCUGUGUG--UGCGCGCa-GGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.