miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 76697 0.67 0.972335
Target:  5'- ---gGAgAGugGCGCGgGCGCG-CCg -3'
miRNA:   3'- caaaCUgUCugUGUGUgCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 76958 0.68 0.937706
Target:  5'- ----cGCAGACGgcCGCGCGCGCGUagaaggCCa -3'
miRNA:   3'- caaacUGUCUGU--GUGUGCGCGCAg-----GG- -5'
29395 5' -52.3 NC_006151.1 + 77104 0.69 0.932653
Target:  5'- ----cGCGGGCGCgGCGgGCGCGcgCCCa -3'
miRNA:   3'- caaacUGUCUGUG-UGUgCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 77939 0.73 0.770123
Target:  5'- ---gGGCGGGCGCGCggcccccacgcugaGCGUGCG-CCCg -3'
miRNA:   3'- caaaCUGUCUGUGUG--------------UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 78728 0.7 0.897083
Target:  5'- ---cGugGGGCGCGCGC-UGCGgCCCa -3'
miRNA:   3'- caaaCugUCUGUGUGUGcGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 78935 0.84 0.241138
Target:  5'- ---cGACAcGCACACACGCGCGcgCCCg -3'
miRNA:   3'- caaaCUGUcUGUGUGUGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 79233 0.66 0.97506
Target:  5'- -----cCAGcCGCGCAUGCGCagacaccaucGUCCCg -3'
miRNA:   3'- caaacuGUCuGUGUGUGCGCG----------CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 80583 0.74 0.692879
Target:  5'- ---cGACGGACgGCGCcCGUGCcGUCCCu -3'
miRNA:   3'- caaaCUGUCUG-UGUGuGCGCG-CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 81370 0.67 0.972335
Target:  5'- ---cGGCGGGCGCcaGCGCGagccgcgcCGCGgcgCCCa -3'
miRNA:   3'- caaaCUGUCUGUG--UGUGC--------GCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 81579 0.68 0.947066
Target:  5'- ----aGCAGGguCuCGCGCGCGUCgCCg -3'
miRNA:   3'- caaacUGUCUguGuGUGCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 81694 0.66 0.979916
Target:  5'- ---cGACGGuCGCcCGCGCGagGUCCa -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCg-CAGGg -5'
29395 5' -52.3 NC_006151.1 + 81842 0.7 0.890293
Target:  5'- --aUGAgCAGGCGCGagagcagGCGCGCGUCgCu -3'
miRNA:   3'- caaACU-GUCUGUGUg------UGCGCGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 83003 0.68 0.947066
Target:  5'- ---cGGCcgcGGCGCAgACGCGCGgcgagggCCCc -3'
miRNA:   3'- caaaCUGu--CUGUGUgUGCGCGCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 83319 0.69 0.903631
Target:  5'- -gUUGcGCAGGgccgugaGCAgGCGCGCGUCCa -3'
miRNA:   3'- caAAC-UGUCUg------UGUgUGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 83369 0.67 0.972335
Target:  5'- ----cGCGGGCGCGCAgGCGCcgcaggugcucGUCCg -3'
miRNA:   3'- caaacUGUCUGUGUGUgCGCG-----------CAGGg -5'
29395 5' -52.3 NC_006151.1 + 84426 0.71 0.827848
Target:  5'- ---aGGCGG-CGCGCggcgGCGCGCGgCCCa -3'
miRNA:   3'- caaaCUGUCuGUGUG----UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 84774 0.71 0.844728
Target:  5'- ---aGGCGGACGCG-GCGCGCGcCgCCg -3'
miRNA:   3'- caaaCUGUCUGUGUgUGCGCGCaG-GG- -5'
29395 5' -52.3 NC_006151.1 + 85358 0.66 0.97506
Target:  5'- ----cGCuGGCGCGCcuGCGCGUgGUCCCc -3'
miRNA:   3'- caaacUGuCUGUGUG--UGCGCG-CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 85774 0.66 0.982061
Target:  5'- --cUGGCgcuGGACGCgcacucgauccGCGCGCGCGUgCa -3'
miRNA:   3'- caaACUG---UCUGUG-----------UGUGCGCGCAgGg -5'
29395 5' -52.3 NC_006151.1 + 88372 0.68 0.947066
Target:  5'- ----cGCAGGCucgGCGCGaGCGCGUCCg -3'
miRNA:   3'- caaacUGUCUG---UGUGUgCGCGCAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.