Results 141 - 160 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 98370 | 0.69 | 0.927349 |
Target: 5'- ---gGGCucuGGGCGCGCGCGCuGCG-CCUg -3' miRNA: 3'- caaaCUG---UCUGUGUGUGCG-CGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 98652 | 0.7 | 0.890293 |
Target: 5'- --cUGGCGGGCGCGCGCuccgccgaCGaCGUCCUg -3' miRNA: 3'- caaACUGUCUGUGUGUGc-------GC-GCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 98713 | 0.68 | 0.955448 |
Target: 5'- ---aGACGG-CGCGCGCGCuCGUgcagcCCCg -3' miRNA: 3'- caaaCUGUCuGUGUGUGCGcGCA-----GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 99329 | 0.77 | 0.536917 |
Target: 5'- --cUGACGGACGCGCAgCGCGcCGUCg- -3' miRNA: 3'- caaACUGUCUGUGUGU-GCGC-GCAGgg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 99614 | 0.7 | 0.883265 |
Target: 5'- ---gGGCuGGCGCACagcgccGCGCGCGaggCCCu -3' miRNA: 3'- caaaCUGuCUGUGUG------UGCGCGCa--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 99985 | 0.67 | 0.966251 |
Target: 5'- --gUGGCGG-CGCugGCGCGCGa--- -3' miRNA: 3'- caaACUGUCuGUGugUGCGCGCaggg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 100009 | 0.77 | 0.526791 |
Target: 5'- --cUGACGGugGCGCACGCGCG-Ca- -3' miRNA: 3'- caaACUGUCugUGUGUGCGCGCaGgg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 100919 | 0.68 | 0.947066 |
Target: 5'- ---cGAC-GACGCgaGCGCGgGCGUgCCCc -3' miRNA: 3'- caaaCUGuCUGUG--UGUGCgCGCA-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 101558 | 0.67 | 0.966251 |
Target: 5'- ---cGGCGGACGugUACGCGCaCGUCgCg -3' miRNA: 3'- caaaCUGUCUGU--GUGUGCGcGCAGgG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 102330 | 0.72 | 0.801149 |
Target: 5'- --cUGACGGAgGCGCGCGCGC-UgCUg -3' miRNA: 3'- caaACUGUCUgUGUGUGCGCGcAgGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 102393 | 0.71 | 0.836385 |
Target: 5'- --cUGGCGcuggucgcGGCGCGCGuCGCGCGgCCCg -3' miRNA: 3'- caaACUGU--------CUGUGUGU-GCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 102541 | 0.77 | 0.526791 |
Target: 5'- ---aGACgguGGugGCGCGCGCGCGggCCCu -3' miRNA: 3'- caaaCUG---UCugUGUGUGCGCGCa-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 102568 | 0.72 | 0.810221 |
Target: 5'- uGUUUGcGCGcGCcCGCGCGCGCGagUCCCg -3' miRNA: 3'- -CAAAC-UGUcUGuGUGUGCGCGC--AGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 102938 | 0.66 | 0.982061 |
Target: 5'- ---cGGCuGcGCGCGCugGaCGCGgcgCCCg -3' miRNA: 3'- caaaCUGuC-UGUGUGugC-GCGCa--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 103099 | 0.66 | 0.977585 |
Target: 5'- ---gGACAcGCuCACGCGCGaCGUgaCCCa -3' miRNA: 3'- caaaCUGUcUGuGUGUGCGC-GCA--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 103283 | 0.69 | 0.927349 |
Target: 5'- --cUGAgccaGGAgACGCGCGCGCGgCUCg -3' miRNA: 3'- caaACUg---UCUgUGUGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 104477 | 0.69 | 0.909934 |
Target: 5'- ---gGGCGGACaugGCGCACGUGC--CCCg -3' miRNA: 3'- caaaCUGUCUG---UGUGUGCGCGcaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 104657 | 0.66 | 0.982061 |
Target: 5'- ---cGGCcgccGACGCgGCGCGCGCG-CUCg -3' miRNA: 3'- caaaCUGu---CUGUG-UGUGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 105330 | 0.66 | 0.98403 |
Target: 5'- --cUGGCcgAGGCccGCGCGCGCGCG-CUg -3' miRNA: 3'- caaACUG--UCUG--UGUGUGCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 106357 | 0.74 | 0.682521 |
Target: 5'- ---gGACacgcuGGACGCGgGCGCGCG-CCCg -3' miRNA: 3'- caaaCUG-----UCUGUGUgUGCGCGCaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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