miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 118466 0.69 0.909934
Target:  5'- ----cGCGGACGCGCACGCG-G-CCUa -3'
miRNA:   3'- caaacUGUCUGUGUGUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 118429 0.69 0.932653
Target:  5'- ---cGACGGGCGCGgaggugUGCGCGCGgCUCg -3'
miRNA:   3'- caaaCUGUCUGUGU------GUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 117613 0.66 0.982061
Target:  5'- ---aGACcguGGGCuCGCGCGCgaGCGUgCCCa -3'
miRNA:   3'- caaaCUG---UCUGuGUGUGCG--CGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 117287 0.66 0.977585
Target:  5'- ---cGACAG-CGCGCGCGCGagcugCUCg -3'
miRNA:   3'- caaaCUGUCuGUGUGUGCGCgca--GGG- -5'
29395 5' -52.3 NC_006151.1 + 117214 0.81 0.337173
Target:  5'- ---aGACGGGCGCggcgucgacgACGCGCGCGUCCa -3'
miRNA:   3'- caaaCUGUCUGUG----------UGUGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 116320 0.68 0.951378
Target:  5'- --aUGAC-GcCGCGCuCGCGCGggCCCg -3'
miRNA:   3'- caaACUGuCuGUGUGuGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 116124 0.67 0.962879
Target:  5'- -cUUGuCGGGCAgCACGaagcCGCGCGagCCCg -3'
miRNA:   3'- caAACuGUCUGU-GUGU----GCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 115582 0.68 0.951378
Target:  5'- ---gGGCAGGuCGCGCucgagcagcuCGCGCGUggCCCa -3'
miRNA:   3'- caaaCUGUCU-GUGUGu---------GCGCGCA--GGG- -5'
29395 5' -52.3 NC_006151.1 + 115125 0.73 0.723596
Target:  5'- ---cGGC-GACGCGCGCGUGCGcCUCg -3'
miRNA:   3'- caaaCUGuCUGUGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 114832 0.7 0.897083
Target:  5'- -gUUGAgGGGCACGC-CGUGCGcgaCCa -3'
miRNA:   3'- caAACUgUCUGUGUGuGCGCGCag-GG- -5'
29395 5' -52.3 NC_006151.1 + 113905 0.76 0.609306
Target:  5'- ---cGGCgcaAGACGCugACGCGCGcggCCCg -3'
miRNA:   3'- caaaCUG---UCUGUGugUGCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 113521 0.73 0.740689
Target:  5'- --gUGGCGGACGCGCGCuuccuggcgcugauGCGCGccgcgggCCCg -3'
miRNA:   3'- caaACUGUCUGUGUGUG--------------CGCGCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 112972 0.79 0.412272
Target:  5'- --gUGGCGGACGCGCGCGCGCcgccgagCCUg -3'
miRNA:   3'- caaACUGUCUGUGUGUGCGCGca-----GGG- -5'
29395 5' -52.3 NC_006151.1 + 112786 0.69 0.915989
Target:  5'- --gUGAUGGACaagcacuuucGCGgGCGCGCGUCgCu -3'
miRNA:   3'- caaACUGUCUG----------UGUgUGCGCGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 111540 0.7 0.897083
Target:  5'- ---cGACAucauGGCGCGCAgcggcCGCGUGUCCa -3'
miRNA:   3'- caaaCUGU----CUGUGUGU-----GCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 111348 0.67 0.95928
Target:  5'- gGUcgGGCGGAUGgGCGCGCGgGgcgagggCCCc -3'
miRNA:   3'- -CAaaCUGUCUGUgUGUGCGCgCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 111118 0.67 0.969401
Target:  5'- ---cGGCGGggaGCGCGCGucugUGCGCGcCCCc -3'
miRNA:   3'- caaaCUGUC---UGUGUGU----GCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 106548 0.68 0.947066
Target:  5'- ----uGCuGGCGCGCAUGUGCaUCCCc -3'
miRNA:   3'- caaacUGuCUGUGUGUGCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 106494 0.7 0.897083
Target:  5'- ---aGACGGGCcagcgGCugGCGCGCG-CCg -3'
miRNA:   3'- caaaCUGUCUG-----UGugUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 106406 0.74 0.672119
Target:  5'- ---gGGCAGGCGCuguucACGCuGCGCGUCgCCg -3'
miRNA:   3'- caaaCUGUCUGUG-----UGUG-CGCGCAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.