miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 106357 0.74 0.682521
Target:  5'- ---gGACacgcuGGACGCGgGCGCGCG-CCCg -3'
miRNA:   3'- caaaCUG-----UCUGUGUgUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 105330 0.66 0.98403
Target:  5'- --cUGGCcgAGGCccGCGCGCGCGCG-CUg -3'
miRNA:   3'- caaACUG--UCUG--UGUGUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 104657 0.66 0.982061
Target:  5'- ---cGGCcgccGACGCgGCGCGCGCG-CUCg -3'
miRNA:   3'- caaaCUGu---CUGUG-UGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 104477 0.69 0.909934
Target:  5'- ---gGGCGGACaugGCGCACGUGC--CCCg -3'
miRNA:   3'- caaaCUGUCUG---UGUGUGCGCGcaGGG- -5'
29395 5' -52.3 NC_006151.1 + 103283 0.69 0.927349
Target:  5'- --cUGAgccaGGAgACGCGCGCGCGgCUCg -3'
miRNA:   3'- caaACUg---UCUgUGUGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 103099 0.66 0.977585
Target:  5'- ---gGACAcGCuCACGCGCGaCGUgaCCCa -3'
miRNA:   3'- caaaCUGUcUGuGUGUGCGC-GCA--GGG- -5'
29395 5' -52.3 NC_006151.1 + 102938 0.66 0.982061
Target:  5'- ---cGGCuGcGCGCGCugGaCGCGgcgCCCg -3'
miRNA:   3'- caaaCUGuC-UGUGUGugC-GCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 102568 0.72 0.810221
Target:  5'- uGUUUGcGCGcGCcCGCGCGCGCGagUCCCg -3'
miRNA:   3'- -CAAAC-UGUcUGuGUGUGCGCGC--AGGG- -5'
29395 5' -52.3 NC_006151.1 + 102541 0.77 0.526791
Target:  5'- ---aGACgguGGugGCGCGCGCGCGggCCCu -3'
miRNA:   3'- caaaCUG---UCugUGUGUGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 102393 0.71 0.836385
Target:  5'- --cUGGCGcuggucgcGGCGCGCGuCGCGCGgCCCg -3'
miRNA:   3'- caaACUGU--------CUGUGUGU-GCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 102330 0.72 0.801149
Target:  5'- --cUGACGGAgGCGCGCGCGC-UgCUg -3'
miRNA:   3'- caaACUGUCUgUGUGUGCGCGcAgGG- -5'
29395 5' -52.3 NC_006151.1 + 101558 0.67 0.966251
Target:  5'- ---cGGCGGACGugUACGCGCaCGUCgCg -3'
miRNA:   3'- caaaCUGUCUGU--GUGUGCGcGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 100919 0.68 0.947066
Target:  5'- ---cGAC-GACGCgaGCGCGgGCGUgCCCc -3'
miRNA:   3'- caaaCUGuCUGUG--UGUGCgCGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 100009 0.77 0.526791
Target:  5'- --cUGACGGugGCGCACGCGCG-Ca- -3'
miRNA:   3'- caaACUGUCugUGUGUGCGCGCaGgg -5'
29395 5' -52.3 NC_006151.1 + 99985 0.67 0.966251
Target:  5'- --gUGGCGG-CGCugGCGCGCGa--- -3'
miRNA:   3'- caaACUGUCuGUGugUGCGCGCaggg -5'
29395 5' -52.3 NC_006151.1 + 99614 0.7 0.883265
Target:  5'- ---gGGCuGGCGCACagcgccGCGCGCGaggCCCu -3'
miRNA:   3'- caaaCUGuCUGUGUG------UGCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 99329 0.77 0.536917
Target:  5'- --cUGACGGACGCGCAgCGCGcCGUCg- -3'
miRNA:   3'- caaACUGUCUGUGUGU-GCGC-GCAGgg -5'
29395 5' -52.3 NC_006151.1 + 98713 0.68 0.955448
Target:  5'- ---aGACGG-CGCGCGCGCuCGUgcagcCCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGUGCGcGCA-----GGG- -5'
29395 5' -52.3 NC_006151.1 + 98652 0.7 0.890293
Target:  5'- --cUGGCGGGCGCGCGCuccgccgaCGaCGUCCUg -3'
miRNA:   3'- caaACUGUCUGUGUGUGc-------GC-GCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 98370 0.69 0.927349
Target:  5'- ---gGGCucuGGGCGCGCGCGCuGCG-CCUg -3'
miRNA:   3'- caaaCUG---UCUGUGUGUGCG-CGCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.