miRNA display CGI


Results 81 - 100 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 98223 0.69 0.927349
Target:  5'- ---cGGCGG-CGCcCGCGCGCGgaCCCu -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCGCa-GGG- -5'
29395 5' -52.3 NC_006151.1 + 98107 0.74 0.672119
Target:  5'- --cUGGCguauaAGGCGCGCGCGCGCcgagCCCa -3'
miRNA:   3'- caaACUG-----UCUGUGUGUGCGCGca--GGG- -5'
29395 5' -52.3 NC_006151.1 + 97313 0.67 0.972335
Target:  5'- cGUcgGGCAGcGCGCGCuGCGCGgGUCg- -3'
miRNA:   3'- -CAaaCUGUC-UGUGUG-UGCGCgCAGgg -5'
29395 5' -52.3 NC_006151.1 + 97006 0.83 0.272541
Target:  5'- ---gGGgGGACACGCGCGCGUGUgCCCg -3'
miRNA:   3'- caaaCUgUCUGUGUGUGCGCGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 96501 0.68 0.955448
Target:  5'- -cUUGccGCAGGCcacguACACGCGCuCGUCCa -3'
miRNA:   3'- caAAC--UGUCUG-----UGUGUGCGcGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 96368 0.66 0.977585
Target:  5'- ----aGCGGAgggccgccucCACGCGCGCGCGgugCCg -3'
miRNA:   3'- caaacUGUCU----------GUGUGUGCGCGCa--GGg -5'
29395 5' -52.3 NC_006151.1 + 95671 0.69 0.921794
Target:  5'- -cUUGACGG-CGCGCuCGC-CGUCCa -3'
miRNA:   3'- caAACUGUCuGUGUGuGCGcGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 95445 0.72 0.810221
Target:  5'- ---gGGCGG-CGC-CGCGCGUGUCCg -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 95281 0.72 0.819124
Target:  5'- -gUUGACgaAGACggcgGCgACGCGCGCGgCCCg -3'
miRNA:   3'- caAACUG--UCUG----UG-UGUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 94947 0.83 0.272541
Target:  5'- ----uGCGGACGCGCA-GCGCGUCCCa -3'
miRNA:   3'- caaacUGUCUGUGUGUgCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 94703 0.69 0.906182
Target:  5'- ----cACGGACcacuGCGCGCGCuccagccgcgccacgGCGUCCCg -3'
miRNA:   3'- caaacUGUCUG----UGUGUGCG---------------CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 93673 0.67 0.95928
Target:  5'- ---aGGCuGuCGCGCgggGCGCGCG-CCCg -3'
miRNA:   3'- caaaCUGuCuGUGUG---UGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 93370 0.69 0.903631
Target:  5'- --aUGACggccggAGGCGCGCGCuaGUGUCUCa -3'
miRNA:   3'- caaACUG------UCUGUGUGUGcgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 92749 0.69 0.920079
Target:  5'- ---cGGCGcGGCACggGCACcugagcgugcugcgGCGCGUCCCc -3'
miRNA:   3'- caaaCUGU-CUGUG--UGUG--------------CGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 91571 0.71 0.844728
Target:  5'- --aUGGCGG-CGCGCGCGUGC-UCCa -3'
miRNA:   3'- caaACUGUCuGUGUGUGCGCGcAGGg -5'
29395 5' -52.3 NC_006151.1 + 88978 0.67 0.966251
Target:  5'- ---aGACGG-CGCACcCGaagcugacCGCGUCCCc -3'
miRNA:   3'- caaaCUGUCuGUGUGuGC--------GCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 88802 0.76 0.609306
Target:  5'- ---cGACGGGCGCGa--GCGCGUCCg -3'
miRNA:   3'- caaaCUGUCUGUGUgugCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 88770 0.67 0.95928
Target:  5'- -gUUGGC-GACGguCGCGCGCucgCCCu -3'
miRNA:   3'- caAACUGuCUGUguGUGCGCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 88686 0.71 0.852868
Target:  5'- -gUUGGCGGACAgCACGCGCcacGUGUagacgCCCu -3'
miRNA:   3'- caAACUGUCUGU-GUGUGCG---CGCA-----GGG- -5'
29395 5' -52.3 NC_006151.1 + 88446 0.74 0.672119
Target:  5'- ----cACGGAgACGCGCGUGCGgcgCCCg -3'
miRNA:   3'- caaacUGUCUgUGUGUGCGCGCa--GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.