miRNA display CGI


Results 121 - 140 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 75771 0.67 0.969401
Target:  5'- ----cACGGGCACGucCGCGUGCGUgUCCg -3'
miRNA:   3'- caaacUGUCUGUGU--GUGCGCGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 75605 0.77 0.557364
Target:  5'- ---cGACGaggucGGCGCGCACGCGCGccgagCCCa -3'
miRNA:   3'- caaaCUGU-----CUGUGUGUGCGCGCa----GGG- -5'
29395 5' -52.3 NC_006151.1 + 74907 0.71 0.843903
Target:  5'- --aUGcCGGucCACGCugagcucgaagccGCGCGCGUCCCu -3'
miRNA:   3'- caaACuGUCu-GUGUG-------------UGCGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 73252 0.67 0.95928
Target:  5'- ---aGACGGGCACGgGCGCcagGCGguugCCg -3'
miRNA:   3'- caaaCUGUCUGUGUgUGCG---CGCa---GGg -5'
29395 5' -52.3 NC_006151.1 + 73037 0.7 0.875264
Target:  5'- -aUUGGCGGugGCGCGgugggggUGCGCGgggUCCg -3'
miRNA:   3'- caAACUGUCugUGUGU-------GCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 72185 0.69 0.903631
Target:  5'- ---gGAC-GAgGCACACGUG-GUCCCc -3'
miRNA:   3'- caaaCUGuCUgUGUGUGCGCgCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 72036 0.67 0.972335
Target:  5'- ----cGCGGGCGCcccgcCGCGCaGCGUCUCg -3'
miRNA:   3'- caaacUGUCUGUGu----GUGCG-CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 71661 0.7 0.890293
Target:  5'- ---cGA-AGAUGCACACGCGCG-CCa -3'
miRNA:   3'- caaaCUgUCUGUGUGUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 71221 0.7 0.876003
Target:  5'- --gUGACcguGGGCGCGCGCGC-CGaCCCc -3'
miRNA:   3'- caaACUG---UCUGUGUGUGCGcGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 69619 0.67 0.969401
Target:  5'- ---cGACAGGaucuCGCGguCG-GCGUCCCg -3'
miRNA:   3'- caaaCUGUCU----GUGUguGCgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 68837 0.66 0.97506
Target:  5'- ---cGGCgugugcucgAGGCGcCGCGCGaCGCGUCCa -3'
miRNA:   3'- caaaCUG---------UCUGU-GUGUGC-GCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 68767 0.68 0.94251
Target:  5'- ---cGGCGGugGCGCGCGCgGCGaggugCgCCg -3'
miRNA:   3'- caaaCUGUCugUGUGUGCG-CGCa----G-GG- -5'
29395 5' -52.3 NC_006151.1 + 68606 0.68 0.955052
Target:  5'- ---cGACGcgccucggaagcGACACGCGaacugccCGCGCGUCgCCg -3'
miRNA:   3'- caaaCUGU------------CUGUGUGU-------GCGCGCAG-GG- -5'
29395 5' -52.3 NC_006151.1 + 68525 0.72 0.801149
Target:  5'- ---gGGCAG-CACcaccaGCGCGCGCagGUCCCg -3'
miRNA:   3'- caaaCUGUCuGUG-----UGUGCGCG--CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 68294 0.67 0.95928
Target:  5'- ---cGGCGG-C-CAgGCGCGCG-CCCa -3'
miRNA:   3'- caaaCUGUCuGuGUgUGCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 67865 0.7 0.890293
Target:  5'- ---cGGCgccgaGGugGCGCGCGCGCcagCCCg -3'
miRNA:   3'- caaaCUG-----UCugUGUGUGCGCGca-GGG- -5'
29395 5' -52.3 NC_006151.1 + 67552 0.69 0.932653
Target:  5'- -gUUGACcaccacguGGCGCcCGCGgGCGUCCa -3'
miRNA:   3'- caAACUGu-------CUGUGuGUGCgCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 66284 0.69 0.921225
Target:  5'- ---aGGCcuccucgAGGCGCACGCG-GCGcUCCCg -3'
miRNA:   3'- caaaCUG-------UCUGUGUGUGCgCGC-AGGG- -5'
29395 5' -52.3 NC_006151.1 + 65828 0.66 0.98403
Target:  5'- ---gGGCGGcCGCGC-CaGCGCGgCCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGuG-CGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 64124 0.66 0.98403
Target:  5'- ---cGGCGGugGCGCGC-C-CGUCUCg -3'
miRNA:   3'- caaaCUGUCugUGUGUGcGcGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.