miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 28574 0.66 0.98403
Target:  5'- ---cGGgAGcccGCAUugGCcgGCGCGUCCCc -3'
miRNA:   3'- caaaCUgUC---UGUGugUG--CGCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 30555 0.66 0.98403
Target:  5'- cGUUccGC-GcCGCACGCGC-CGUCCCg -3'
miRNA:   3'- -CAAacUGuCuGUGUGUGCGcGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 35202 0.66 0.98403
Target:  5'- ---cGGgAGACGC-CucCGCGCG-CCCa -3'
miRNA:   3'- caaaCUgUCUGUGuGu-GCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 65828 0.66 0.98403
Target:  5'- ---gGGCGGcCGCGC-CaGCGCGgCCCg -3'
miRNA:   3'- caaaCUGUCuGUGUGuG-CGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 105330 0.66 0.98403
Target:  5'- --cUGGCcgAGGCccGCGCGCGCGCG-CUg -3'
miRNA:   3'- caaACUG--UCUG--UGUGUGCGCGCaGGg -5'
29395 5' -52.3 NC_006151.1 + 85774 0.66 0.982061
Target:  5'- --cUGGCgcuGGACGCgcacucgauccGCGCGCGCGUgCa -3'
miRNA:   3'- caaACUG---UCUGUG-----------UGUGCGCGCAgGg -5'
29395 5' -52.3 NC_006151.1 + 31434 0.66 0.982061
Target:  5'- ---gGACGGgguGCGCGCGCGUGUGUgUa -3'
miRNA:   3'- caaaCUGUC---UGUGUGUGCGCGCAgGg -5'
29395 5' -52.3 NC_006151.1 + 118753 0.66 0.977585
Target:  5'- ---cGGCGGccgugcCACGCGCGUGCGgaaCCUg -3'
miRNA:   3'- caaaCUGUCu-----GUGUGUGCGCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 96368 0.66 0.977585
Target:  5'- ----aGCGGAgggccgccucCACGCGCGCGCGgugCCg -3'
miRNA:   3'- caaacUGUCU----------GUGUGUGCGCGCa--GGg -5'
29395 5' -52.3 NC_006151.1 + 138693 0.66 0.979916
Target:  5'- ---aGACGGACGCGCugagcccgGCGCuGCGcgCCg -3'
miRNA:   3'- caaaCUGUCUGUGUG--------UGCG-CGCa-GGg -5'
29395 5' -52.3 NC_006151.1 + 41517 0.66 0.979916
Target:  5'- ---gGGCGGGCGC-CGCGgaGCGgaagCCCc -3'
miRNA:   3'- caaaCUGUCUGUGuGUGCg-CGCa---GGG- -5'
29395 5' -52.3 NC_006151.1 + 47263 0.66 0.979916
Target:  5'- ---aGAUGGAcCGCuccgGCGCGCaGCGUCCg -3'
miRNA:   3'- caaaCUGUCU-GUG----UGUGCG-CGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 51955 0.66 0.979916
Target:  5'- ----cGCAGcacCACGCGCgGCGUGUCCa -3'
miRNA:   3'- caaacUGUCu--GUGUGUG-CGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 81694 0.66 0.979916
Target:  5'- ---cGACGGuCGCcCGCGCGagGUCCa -3'
miRNA:   3'- caaaCUGUCuGUGuGUGCGCg-CAGGg -5'
29395 5' -52.3 NC_006151.1 + 130781 0.66 0.979916
Target:  5'- ---cGuCGGGCAUgu-CGCGCGUCCa -3'
miRNA:   3'- caaaCuGUCUGUGuguGCGCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 139826 0.66 0.979916
Target:  5'- -------cGACGCACGCGCGgGUCg- -3'
miRNA:   3'- caaacuguCUGUGUGUGCGCgCAGgg -5'
29395 5' -52.3 NC_006151.1 + 57131 0.66 0.981855
Target:  5'- ---cGGCGGucGCcccuGCGCACGCggcgggggcgaggGCGUCCCc -3'
miRNA:   3'- caaaCUGUC--UG----UGUGUGCG-------------CGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 117613 0.66 0.982061
Target:  5'- ---aGACcguGGGCuCGCGCGCgaGCGUgCCCa -3'
miRNA:   3'- caaaCUG---UCUGuGUGUGCG--CGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 28127 0.66 0.982061
Target:  5'- ---cGGCucgGGGCGCGCucCGCGCcucUCCCg -3'
miRNA:   3'- caaaCUG---UCUGUGUGu-GCGCGc--AGGG- -5'
29395 5' -52.3 NC_006151.1 + 60155 0.66 0.982061
Target:  5'- ---cGACAGGCGCGC-CG-GCcagCCCg -3'
miRNA:   3'- caaaCUGUCUGUGUGuGCgCGca-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.