Results 81 - 100 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 81370 | 0.67 | 0.972335 |
Target: 5'- ---cGGCGGGCGCcaGCGCGagccgcgcCGCGgcgCCCa -3' miRNA: 3'- caaaCUGUCUGUG--UGUGC--------GCGCa--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 72036 | 0.67 | 0.972335 |
Target: 5'- ----cGCGGGCGCcccgcCGCGCaGCGUCUCg -3' miRNA: 3'- caaacUGUCUGUGu----GUGCG-CGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 58986 | 0.67 | 0.972335 |
Target: 5'- ----cGCGGGCACGagcgagaGCGCGgCGUCCa -3' miRNA: 3'- caaacUGUCUGUGUg------UGCGC-GCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 97313 | 0.67 | 0.972335 |
Target: 5'- cGUcgGGCAGcGCGCGCuGCGCGgGUCg- -3' miRNA: 3'- -CAaaCUGUC-UGUGUG-UGCGCgCAGgg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 83369 | 0.67 | 0.972335 |
Target: 5'- ----cGCGGGCGCGCAgGCGCcgcaggugcucGUCCg -3' miRNA: 3'- caaacUGUCUGUGUGUgCGCG-----------CAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 76697 | 0.67 | 0.972335 |
Target: 5'- ---gGAgAGugGCGCGgGCGCG-CCg -3' miRNA: 3'- caaaCUgUCugUGUGUgCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 63324 | 0.67 | 0.971477 |
Target: 5'- ----cGCGGugACGCgaaaggccuccucgGCGCGCG-CCCg -3' miRNA: 3'- caaacUGUCugUGUG--------------UGCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 79233 | 0.66 | 0.97506 |
Target: 5'- -----cCAGcCGCGCAUGCGCagacaccaucGUCCCg -3' miRNA: 3'- caaacuGUCuGUGUGUGCGCG----------CAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 135146 | 0.66 | 0.97506 |
Target: 5'- ---gGGCAGACccaGCccgGCGgGCGCGgCCCg -3' miRNA: 3'- caaaCUGUCUG---UG---UGUgCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 31588 | 0.66 | 0.97506 |
Target: 5'- ---gGGCGG-CGCGCucCGCGC-UCCCc -3' miRNA: 3'- caaaCUGUCuGUGUGu-GCGCGcAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 138693 | 0.66 | 0.979916 |
Target: 5'- ---aGACGGACGCGCugagcccgGCGCuGCGcgCCg -3' miRNA: 3'- caaaCUGUCUGUGUG--------UGCG-CGCa-GGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 96368 | 0.66 | 0.977585 |
Target: 5'- ----aGCGGAgggccgccucCACGCGCGCGCGgugCCg -3' miRNA: 3'- caaacUGUCU----------GUGUGUGCGCGCa--GGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 118753 | 0.66 | 0.977585 |
Target: 5'- ---cGGCGGccgugcCACGCGCGUGCGgaaCCUg -3' miRNA: 3'- caaaCUGUCu-----GUGUGUGCGCGCa--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 117287 | 0.66 | 0.977585 |
Target: 5'- ---cGACAG-CGCGCGCGCGagcugCUCg -3' miRNA: 3'- caaaCUGUCuGUGUGUGCGCgca--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 54677 | 0.66 | 0.977585 |
Target: 5'- --cUGGcCGGGCAC-C-UGCGCGUCgCCg -3' miRNA: 3'- caaACU-GUCUGUGuGuGCGCGCAG-GG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 103099 | 0.66 | 0.977585 |
Target: 5'- ---gGACAcGCuCACGCGCGaCGUgaCCCa -3' miRNA: 3'- caaaCUGUcUGuGUGUGCGC-GCA--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 68837 | 0.66 | 0.97506 |
Target: 5'- ---cGGCgugugcucgAGGCGcCGCGCGaCGCGUCCa -3' miRNA: 3'- caaaCUG---------UCUGU-GUGUGC-GCGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 85358 | 0.66 | 0.97506 |
Target: 5'- ----cGCuGGCGCGCcuGCGCGUgGUCCCc -3' miRNA: 3'- caaacUGuCUGUGUG--UGCGCG-CAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 56448 | 0.66 | 0.97506 |
Target: 5'- ---cGAC-GAgACGCGCGUGCuGcCCCa -3' miRNA: 3'- caaaCUGuCUgUGUGUGCGCG-CaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 38088 | 0.66 | 0.97506 |
Target: 5'- --gUGACGGcCGCGCugcuCGCGC-UCCg -3' miRNA: 3'- caaACUGUCuGUGUGu---GCGCGcAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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