miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29395 5' -52.3 NC_006151.1 + 75771 0.67 0.969401
Target:  5'- ----cACGGGCACGucCGCGUGCGUgUCCg -3'
miRNA:   3'- caaacUGUCUGUGU--GUGCGCGCA-GGG- -5'
29395 5' -52.3 NC_006151.1 + 69619 0.67 0.969401
Target:  5'- ---cGACAGGaucuCGCGguCG-GCGUCCCg -3'
miRNA:   3'- caaaCUGUCU----GUGUguGCgCGCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 19506 0.67 0.969401
Target:  5'- ---gGGCcucGGGgACGCAgGCGCGgCCCa -3'
miRNA:   3'- caaaCUG---UCUgUGUGUgCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 101558 0.67 0.966251
Target:  5'- ---cGGCGGACGugUACGCGCaCGUCgCg -3'
miRNA:   3'- caaaCUGUCUGU--GUGUGCGcGCAGgG- -5'
29395 5' -52.3 NC_006151.1 + 21856 0.67 0.966251
Target:  5'- ---cGACGGACAC-CAgGCGcCGguacuggCCCu -3'
miRNA:   3'- caaaCUGUCUGUGuGUgCGC-GCa------GGG- -5'
29395 5' -52.3 NC_006151.1 + 97313 0.67 0.972335
Target:  5'- cGUcgGGCAGcGCGCGCuGCGCGgGUCg- -3'
miRNA:   3'- -CAaaCUGUC-UGUGUG-UGCGCgCAGgg -5'
29395 5' -52.3 NC_006151.1 + 58986 0.67 0.972335
Target:  5'- ----cGCGGGCACGagcgagaGCGCGgCGUCCa -3'
miRNA:   3'- caaacUGUCUGUGUg------UGCGC-GCAGGg -5'
29395 5' -52.3 NC_006151.1 + 103099 0.66 0.977585
Target:  5'- ---gGACAcGCuCACGCGCGaCGUgaCCCa -3'
miRNA:   3'- caaaCUGUcUGuGUGUGCGC-GCA--GGG- -5'
29395 5' -52.3 NC_006151.1 + 68837 0.66 0.97506
Target:  5'- ---cGGCgugugcucgAGGCGcCGCGCGaCGCGUCCa -3'
miRNA:   3'- caaaCUG---------UCUGU-GUGUGC-GCGCAGGg -5'
29395 5' -52.3 NC_006151.1 + 85358 0.66 0.97506
Target:  5'- ----cGCuGGCGCGCcuGCGCGUgGUCCCc -3'
miRNA:   3'- caaacUGuCUGUGUG--UGCGCG-CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 56448 0.66 0.97506
Target:  5'- ---cGAC-GAgACGCGCGUGCuGcCCCa -3'
miRNA:   3'- caaaCUGuCUgUGUGUGCGCG-CaGGG- -5'
29395 5' -52.3 NC_006151.1 + 38088 0.66 0.97506
Target:  5'- --gUGACGGcCGCGCugcuCGCGC-UCCg -3'
miRNA:   3'- caaACUGUCuGUGUGu---GCGCGcAGGg -5'
29395 5' -52.3 NC_006151.1 + 31588 0.66 0.97506
Target:  5'- ---gGGCGG-CGCGCucCGCGC-UCCCc -3'
miRNA:   3'- caaaCUGUCuGUGUGu-GCGCGcAGGG- -5'
29395 5' -52.3 NC_006151.1 + 135146 0.66 0.97506
Target:  5'- ---gGGCAGACccaGCccgGCGgGCGCGgCCCg -3'
miRNA:   3'- caaaCUGUCUG---UG---UGUgCGCGCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 79233 0.66 0.97506
Target:  5'- -----cCAGcCGCGCAUGCGCagacaccaucGUCCCg -3'
miRNA:   3'- caaacuGUCuGUGUGUGCGCG----------CAGGG- -5'
29395 5' -52.3 NC_006151.1 + 59196 0.66 0.97506
Target:  5'- -cUUGcGCAGGuucuuCACGCGCGUGgGcCCCg -3'
miRNA:   3'- caAAC-UGUCU-----GUGUGUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 25481 0.66 0.97506
Target:  5'- ---cGACAGACuCGCGcCGCcucCGUCCUc -3'
miRNA:   3'- caaaCUGUCUGuGUGU-GCGc--GCAGGG- -5'
29395 5' -52.3 NC_006151.1 + 4039 0.66 0.97506
Target:  5'- ---aGGCGGccuCGCGgGCGCGgGcCCCg -3'
miRNA:   3'- caaaCUGUCu--GUGUgUGCGCgCaGGG- -5'
29395 5' -52.3 NC_006151.1 + 81370 0.67 0.972335
Target:  5'- ---cGGCGGGCGCcaGCGCGagccgcgcCGCGgcgCCCa -3'
miRNA:   3'- caaaCUGUCUGUG--UGUGC--------GCGCa--GGG- -5'
29395 5' -52.3 NC_006151.1 + 72036 0.67 0.972335
Target:  5'- ----cGCGGGCGCcccgcCGCGCaGCGUCUCg -3'
miRNA:   3'- caaacUGUCUGUGu----GUGCG-CGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.