Results 41 - 60 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29395 | 5' | -52.3 | NC_006151.1 | + | 28574 | 0.66 | 0.98403 |
Target: 5'- ---cGGgAGcccGCAUugGCcgGCGCGUCCCc -3' miRNA: 3'- caaaCUgUC---UGUGugUG--CGCGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 30555 | 0.66 | 0.98403 |
Target: 5'- cGUUccGC-GcCGCACGCGC-CGUCCCg -3' miRNA: 3'- -CAAacUGuCuGUGUGUGCGcGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 35202 | 0.66 | 0.98403 |
Target: 5'- ---cGGgAGACGC-CucCGCGCG-CCCa -3' miRNA: 3'- caaaCUgUCUGUGuGu-GCGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 65828 | 0.66 | 0.98403 |
Target: 5'- ---gGGCGGcCGCGC-CaGCGCGgCCCg -3' miRNA: 3'- caaaCUGUCuGUGUGuG-CGCGCaGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 105330 | 0.66 | 0.98403 |
Target: 5'- --cUGGCcgAGGCccGCGCGCGCGCG-CUg -3' miRNA: 3'- caaACUG--UCUG--UGUGUGCGCGCaGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 85774 | 0.66 | 0.982061 |
Target: 5'- --cUGGCgcuGGACGCgcacucgauccGCGCGCGCGUgCa -3' miRNA: 3'- caaACUG---UCUGUG-----------UGUGCGCGCAgGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 31434 | 0.66 | 0.982061 |
Target: 5'- ---gGACGGgguGCGCGCGCGUGUGUgUa -3' miRNA: 3'- caaaCUGUC---UGUGUGUGCGCGCAgGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 118753 | 0.66 | 0.977585 |
Target: 5'- ---cGGCGGccgugcCACGCGCGUGCGgaaCCUg -3' miRNA: 3'- caaaCUGUCu-----GUGUGUGCGCGCa--GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 96368 | 0.66 | 0.977585 |
Target: 5'- ----aGCGGAgggccgccucCACGCGCGCGCGgugCCg -3' miRNA: 3'- caaacUGUCU----------GUGUGUGCGCGCa--GGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 138693 | 0.66 | 0.979916 |
Target: 5'- ---aGACGGACGCGCugagcccgGCGCuGCGcgCCg -3' miRNA: 3'- caaaCUGUCUGUGUG--------UGCG-CGCa-GGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 41517 | 0.66 | 0.979916 |
Target: 5'- ---gGGCGGGCGC-CGCGgaGCGgaagCCCc -3' miRNA: 3'- caaaCUGUCUGUGuGUGCg-CGCa---GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 47263 | 0.66 | 0.979916 |
Target: 5'- ---aGAUGGAcCGCuccgGCGCGCaGCGUCCg -3' miRNA: 3'- caaaCUGUCU-GUG----UGUGCG-CGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 51955 | 0.66 | 0.979916 |
Target: 5'- ----cGCAGcacCACGCGCgGCGUGUCCa -3' miRNA: 3'- caaacUGUCu--GUGUGUG-CGCGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 81694 | 0.66 | 0.979916 |
Target: 5'- ---cGACGGuCGCcCGCGCGagGUCCa -3' miRNA: 3'- caaaCUGUCuGUGuGUGCGCg-CAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 130781 | 0.66 | 0.979916 |
Target: 5'- ---cGuCGGGCAUgu-CGCGCGUCCa -3' miRNA: 3'- caaaCuGUCUGUGuguGCGCGCAGGg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 139826 | 0.66 | 0.979916 |
Target: 5'- -------cGACGCACGCGCGgGUCg- -3' miRNA: 3'- caaacuguCUGUGUGUGCGCgCAGgg -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 57131 | 0.66 | 0.981855 |
Target: 5'- ---cGGCGGucGCcccuGCGCACGCggcgggggcgaggGCGUCCCc -3' miRNA: 3'- caaaCUGUC--UG----UGUGUGCG-------------CGCAGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 117613 | 0.66 | 0.982061 |
Target: 5'- ---aGACcguGGGCuCGCGCGCgaGCGUgCCCa -3' miRNA: 3'- caaaCUG---UCUGuGUGUGCG--CGCA-GGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 28127 | 0.66 | 0.982061 |
Target: 5'- ---cGGCucgGGGCGCGCucCGCGCcucUCCCg -3' miRNA: 3'- caaaCUG---UCUGUGUGu-GCGCGc--AGGG- -5' |
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29395 | 5' | -52.3 | NC_006151.1 | + | 60155 | 0.66 | 0.982061 |
Target: 5'- ---cGACAGGCGCGC-CG-GCcagCCCg -3' miRNA: 3'- caaaCUGUCUGUGUGuGCgCGca-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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