miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 139190 0.7 0.333161
Target:  5'- uGCUGGCGGuCGGGgCGCUGGagcuccugGCGGc -3'
miRNA:   3'- cCGGCUGCC-GCCCgGCGACCa-------CGUCu -5'
29396 5' -63.8 NC_006151.1 + 78122 0.7 0.31909
Target:  5'- cGCCauccuGCGGCGGGCCGCgGGcGCcucGGAc -3'
miRNA:   3'- cCGGc----UGCCGCCCGGCGaCCaCG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 134641 0.7 0.31909
Target:  5'- uGCUGACGcGCGaGCCGCUGG-GCuGGAu -3'
miRNA:   3'- cCGGCUGC-CGCcCGGCGACCaCG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 136988 0.7 0.333161
Target:  5'- cGCCgGGCGGCGGGCgcgcgcgcacggCGCUGG-GCGc- -3'
miRNA:   3'- cCGG-CUGCCGCCCG------------GCGACCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 27473 0.7 0.34768
Target:  5'- cGGUCGAgCGGgGGGUCGgCggGGUGguGGg -3'
miRNA:   3'- -CCGGCU-GCCgCCCGGC-Ga-CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 141701 0.7 0.355108
Target:  5'- cGGCUGGCGGCGGa-CGC-GGUGCccGGGg -3'
miRNA:   3'- -CCGGCUGCCGCCcgGCGaCCACG--UCU- -5'
29396 5' -63.8 NC_006151.1 + 17118 0.7 0.355108
Target:  5'- gGGCucCGGCGGCGGuGCUGCgGGagGCGGc -3'
miRNA:   3'- -CCG--GCUGCCGCC-CGGCGaCCa-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 133342 0.7 0.34768
Target:  5'- cGGCCGguuccGCGGCGGcGgUGgUGGUGguGGu -3'
miRNA:   3'- -CCGGC-----UGCCGCC-CgGCgACCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 29432 0.7 0.34768
Target:  5'- uGGCCG-CGGgGGGCgGCggggagagGGgacGCGGAg -3'
miRNA:   3'- -CCGGCuGCCgCCCGgCGa-------CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 135105 0.7 0.340365
Target:  5'- gGGCgGGCGGCGGuaGCgCGCgGG-GCGGGc -3'
miRNA:   3'- -CCGgCUGCCGCC--CG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 137354 0.71 0.275851
Target:  5'- aGGCCGACGGCgacuGGGCCGCgcaccccugcuacGUGUacaAGAg -3'
miRNA:   3'- -CCGGCUGCCG----CCCGGCGac-----------CACG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 102967 0.71 0.279581
Target:  5'- cGCCcacGACGGCGcGCUGCUGGcGCAGc -3'
miRNA:   3'- cCGG---CUGCCGCcCGGCGACCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 109707 0.71 0.288439
Target:  5'- aGGCCGAgacccCGGCGaccccgcugcgcucGCCGCUGGaGCGGAu -3'
miRNA:   3'- -CCGGCU-----GCCGCc-------------CGGCGACCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 32785 0.71 0.292302
Target:  5'- cGGCCG-CGGgGGGCCGaagcGGacGCGGAa -3'
miRNA:   3'- -CCGGCuGCCgCCCGGCga--CCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 44198 0.71 0.292302
Target:  5'- cGGgCGGCGGCGGGagauggugauggUgGUUGGUGguGAu -3'
miRNA:   3'- -CCgGCUGCCGCCC------------GgCGACCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 97502 0.71 0.292302
Target:  5'- cGCCucGCGGCGGuGgCGCUGcGUGUAGAc -3'
miRNA:   3'- cCGGc-UGCCGCC-CgGCGAC-CACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 18159 0.71 0.29883
Target:  5'- gGGgCGGCGGCGGGCaUGUcGGaaUGCGGGc -3'
miRNA:   3'- -CCgGCUGCCGCCCG-GCGaCC--ACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 3392 0.71 0.29883
Target:  5'- gGGCCGccuCGGaGGGCCGCgGcGUGUGGGu -3'
miRNA:   3'- -CCGGCu--GCCgCCCGGCGaC-CACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 103313 0.71 0.312224
Target:  5'- cGGCgCGACGccgaGCuGcGCaCGCUGGUGCAGGc -3'
miRNA:   3'- -CCG-GCUGC----CGcC-CG-GCGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 112602 0.71 0.273387
Target:  5'- aGGCCG-CcGCGGcGCCGCUGGcGCuGGAc -3'
miRNA:   3'- -CCGGCuGcCGCC-CGGCGACCaCG-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.