miRNA display CGI


Results 121 - 140 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 3392 0.71 0.29883
Target:  5'- gGGCCGccuCGGaGGGCCGCgGcGUGUGGGu -3'
miRNA:   3'- -CCGGCu--GCCgCCCGGCGaC-CACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 103313 0.71 0.312224
Target:  5'- cGGCgCGACGccgaGCuGcGCaCGCUGGUGCAGGc -3'
miRNA:   3'- -CCG-GCUGC----CGcC-CG-GCGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 122171 0.71 0.312224
Target:  5'- -aUCGGCGGCGGGCuCG-UGGUGCcgccGGAg -3'
miRNA:   3'- ccGGCUGCCGCCCG-GCgACCACG----UCU- -5'
29396 5' -63.8 NC_006151.1 + 17487 0.72 0.244062
Target:  5'- cGUCGGCGGCGcGCCGCUGcUGCAc- -3'
miRNA:   3'- cCGGCUGCCGCcCGGCGACcACGUcu -5'
29396 5' -63.8 NC_006151.1 + 118242 0.72 0.24971
Target:  5'- gGGCuCGGCGGCGGGCucaCGCUGaaGCuGAc -3'
miRNA:   3'- -CCG-GCUGCCGCCCG---GCGACcaCGuCU- -5'
29396 5' -63.8 NC_006151.1 + 72266 0.72 0.24971
Target:  5'- cGCCGAgCGGCGuGGCCaGCaugcGGUGCGGc -3'
miRNA:   3'- cCGGCU-GCCGC-CCGG-CGa---CCACGUCu -5'
29396 5' -63.8 NC_006151.1 + 89716 0.72 0.24971
Target:  5'- -cCCGGCGGCGccGGCCGCggccgcGGUGguGGg -3'
miRNA:   3'- ccGGCUGCCGC--CCGGCGa-----CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 68764 0.72 0.26133
Target:  5'- aGCCGGCGGUGGcGCgCGCggcgaGGUGCGc- -3'
miRNA:   3'- cCGGCUGCCGCC-CG-GCGa----CCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 3428 0.72 0.26133
Target:  5'- cGGCCGggacGCGGCGGaaGCCGCcgucgGGcGCGGGg -3'
miRNA:   3'- -CCGGC----UGCCGCC--CGGCGa----CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 77373 0.72 0.267304
Target:  5'- cGCCGACGGCGGGgaCCGCgcguacuuuGUGCAcGGg -3'
miRNA:   3'- cCGGCUGCCGCCC--GGCGac-------CACGU-CU- -5'
29396 5' -63.8 NC_006151.1 + 75134 0.73 0.202626
Target:  5'- cGGCCGGCGGCGcGGCCcaGCgcgGGcGCAcGGg -3'
miRNA:   3'- -CCGGCUGCCGC-CCGG--CGa--CCaCGU-CU- -5'
29396 5' -63.8 NC_006151.1 + 81535 0.73 0.210887
Target:  5'- cGGCCG-CGGCGGcgcgcuCCGCggugcacauggccgUGGUGCGGAg -3'
miRNA:   3'- -CCGGCuGCCGCCc-----GGCG--------------ACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 131868 0.73 0.212375
Target:  5'- cGCCGGCGGCgucGGGUCGCaGG-GCAGc -3'
miRNA:   3'- cCGGCUGCCG---CCCGGCGaCCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 90666 0.73 0.224603
Target:  5'- cGCgGgGCGGCGGGCCGCUugucccccgcggcggGGgcgGCGGAc -3'
miRNA:   3'- cCGgC-UGCCGCCCGGCGA---------------CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 84675 0.73 0.227225
Target:  5'- aGGCCGA-GGUGgacgagcagcugcGGCCGCUGGagcgGCAGGu -3'
miRNA:   3'- -CCGGCUgCCGC-------------CCGGCGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 5653 0.73 0.233084
Target:  5'- cGGcCCGGCGGCGGGggagGCUGGggaaGCGGGc -3'
miRNA:   3'- -CC-GGCUGCCGCCCgg--CGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 121832 0.74 0.193267
Target:  5'- uGCCGcuaccucgcGCGGCGGcuGCCGCUGGaggcGCAGAc -3'
miRNA:   3'- cCGGC---------UGCCGCC--CGGCGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 64856 0.74 0.188732
Target:  5'- gGGCCucGGCGGaGGGCCGCUGcccgGCGGGa -3'
miRNA:   3'- -CCGG--CUGCCgCCCGGCGACca--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 130943 0.74 0.18429
Target:  5'- gGGgCGGCGGgGGGUCGCgcgGGcGCGGGg -3'
miRNA:   3'- -CCgGCUGCCgCCCGGCGa--CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 128537 0.74 0.179941
Target:  5'- aGGCC-ACGGCGGGcCCGCcGGcGCGGu -3'
miRNA:   3'- -CCGGcUGCCGCCC-GGCGaCCaCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.