miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 102967 0.71 0.279581
Target:  5'- cGCCcacGACGGCGcGCUGCUGGcGCAGc -3'
miRNA:   3'- cCGG---CUGCCGCcCGGCGACCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 115658 0.71 0.272774
Target:  5'- cGGCCGAUGGUcgucacgGuGGCCGCcacgGGgagGCAGGg -3'
miRNA:   3'- -CCGGCUGCCG-------C-CCGGCGa---CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 137354 0.71 0.275851
Target:  5'- aGGCCGACGGCgacuGGGCCGCgcaccccugcuacGUGUacaAGAg -3'
miRNA:   3'- -CCGGCUGCCG----CCCGGCGac-----------CACG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 112602 0.71 0.273387
Target:  5'- aGGCCG-CcGCGGcGCCGCUGGcGCuGGAc -3'
miRNA:   3'- -CCGGCuGcCGCC-CGGCGACCaCG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 134641 0.7 0.31909
Target:  5'- uGCUGACGcGCGaGCCGCUGG-GCuGGAu -3'
miRNA:   3'- cCGGCUGC-CGCcCGGCGACCaCG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 78122 0.7 0.31909
Target:  5'- cGCCauccuGCGGCGGGCCGCgGGcGCcucGGAc -3'
miRNA:   3'- cCGGc----UGCCGCCCGGCGaCCaCG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 139190 0.7 0.333161
Target:  5'- uGCUGGCGGuCGGGgCGCUGGagcuccugGCGGc -3'
miRNA:   3'- cCGGCUGCC-GCCCgGCGACCa-------CGUCu -5'
29396 5' -63.8 NC_006151.1 + 64475 0.7 0.333161
Target:  5'- cGCCGccGCGGCGGGgacgcCCGCgGGcGCGGGc -3'
miRNA:   3'- cCGGC--UGCCGCCC-----GGCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 141701 0.7 0.355108
Target:  5'- cGGCUGGCGGCGGa-CGC-GGUGCccGGGg -3'
miRNA:   3'- -CCGGCUGCCGCCcgGCGaCCACG--UCU- -5'
29396 5' -63.8 NC_006151.1 + 17118 0.7 0.355108
Target:  5'- gGGCucCGGCGGCGGuGCUGCgGGagGCGGc -3'
miRNA:   3'- -CCG--GCUGCCGCC-CGGCGaCCa-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 133342 0.7 0.34768
Target:  5'- cGGCCGguuccGCGGCGGcGgUGgUGGUGguGGu -3'
miRNA:   3'- -CCGGC-----UGCCGCC-CgGCgACCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 29432 0.7 0.34768
Target:  5'- uGGCCG-CGGgGGGCgGCggggagagGGgacGCGGAg -3'
miRNA:   3'- -CCGGCuGCCgCCCGgCGa-------CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 135105 0.7 0.340365
Target:  5'- gGGCgGGCGGCGGuaGCgCGCgGG-GCGGGc -3'
miRNA:   3'- -CCGgCUGCCGCC--CG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 27473 0.7 0.34768
Target:  5'- cGGUCGAgCGGgGGGUCGgCggGGUGguGGg -3'
miRNA:   3'- -CCGGCU-GCCgCCCGGC-Ga-CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 136988 0.7 0.333161
Target:  5'- cGCCgGGCGGCGGGCgcgcgcgcacggCGCUGG-GCGc- -3'
miRNA:   3'- cCGG-CUGCCGCCCG------------GCGACCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 120793 0.7 0.333161
Target:  5'- cGGCCGACGcggaGCGcGCCGCgcgcgaGGUGCuGGAc -3'
miRNA:   3'- -CCGGCUGC----CGCcCGGCGa-----CCACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 103627 0.69 0.385922
Target:  5'- cGCCGACgcgguGGCGGcGgCGCUGGcggacGCGGAc -3'
miRNA:   3'- cCGGCUG-----CCGCC-CgGCGACCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 110833 0.69 0.385922
Target:  5'- aGGCCGACcgugGGcCGGGCCcaGCUGcUGUAGu -3'
miRNA:   3'- -CCGGCUG----CC-GCCCGG--CGACcACGUCu -5'
29396 5' -63.8 NC_006151.1 + 23001 0.69 0.385922
Target:  5'- cGGCCGcGCGGgugGGGgCGCgggGGUGguGGa -3'
miRNA:   3'- -CCGGC-UGCCg--CCCgGCGa--CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 36862 0.69 0.385922
Target:  5'- cGGCCucgccgggGACGGCGGGgCGCccccGCAGAg -3'
miRNA:   3'- -CCGG--------CUGCCGCCCgGCGaccaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.