miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 104594 0.69 0.401977
Target:  5'- aGGCCGGCGGCa-GCCGC-GGcGCcGAg -3'
miRNA:   3'- -CCGGCUGCCGccCGGCGaCCaCGuCU- -5'
29396 5' -63.8 NC_006151.1 + 31760 0.69 0.378055
Target:  5'- cGCCugcGGCGGCGGGCgCGCgccGG-GCGGc -3'
miRNA:   3'- cCGG---CUGCCGCCCG-GCGa--CCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 77532 0.69 0.362647
Target:  5'- cGGCCG-CGcGUGGGCCGCccc-GCAGGg -3'
miRNA:   3'- -CCGGCuGC-CGCCCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 89269 0.69 0.401977
Target:  5'- uGGUCGACGGCGccgcggcgauGGCCGCcGcGUagagcgccaGCAGAg -3'
miRNA:   3'- -CCGGCUGCCGC----------CCGGCGaC-CA---------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 57512 0.69 0.370296
Target:  5'- cGGCCGcgGCGGCGgcGGCCGCcuccGGcGCGGc -3'
miRNA:   3'- -CCGGC--UGCCGC--CCGGCGa---CCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 127310 0.69 0.362647
Target:  5'- aGGCCGucgucCGcGCGGGuCCGCgggcgggGGUGCuGGu -3'
miRNA:   3'- -CCGGCu----GC-CGCCC-GGCGa------CCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 103627 0.69 0.385922
Target:  5'- cGCCGACgcgguGGCGGcGgCGCUGGcggacGCGGAc -3'
miRNA:   3'- cCGGCUG-----CCGCC-CgGCGACCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 5232 0.69 0.391493
Target:  5'- aGGCCGagcgccgcgcggcgGCGGCGGGggcCCGggGG-GCGGAg -3'
miRNA:   3'- -CCGGC--------------UGCCGCCC---GGCgaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 98958 0.69 0.362647
Target:  5'- gGGCCGugGaCGaGGCggCGCUGGUGCc-- -3'
miRNA:   3'- -CCGGCugCcGC-CCG--GCGACCACGucu -5'
29396 5' -63.8 NC_006151.1 + 127280 0.69 0.370296
Target:  5'- aGGUCGAUGaCGGGUCGggGGUGCuGGu -3'
miRNA:   3'- -CCGGCUGCcGCCCGGCgaCCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 23001 0.69 0.385922
Target:  5'- cGGCCGcGCGGgugGGGgCGCgggGGUGguGGa -3'
miRNA:   3'- -CCGGC-UGCCg--CCCgGCGa--CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 110833 0.69 0.385922
Target:  5'- aGGCCGACcgugGGcCGGGCCcaGCUGcUGUAGu -3'
miRNA:   3'- -CCGGCUG----CC-GCCCGG--CGACcACGUCu -5'
29396 5' -63.8 NC_006151.1 + 97992 0.69 0.393896
Target:  5'- uGCCgGGCGGCGuGGCCGCguagGCGGc -3'
miRNA:   3'- cCGG-CUGCCGC-CCGGCGaccaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 129437 0.69 0.38513
Target:  5'- cGGCCccaaGugGGCGGGgCGCacggccgUGG-GCGGGa -3'
miRNA:   3'- -CCGG----CugCCGCCCgGCG-------ACCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 130265 0.68 0.417617
Target:  5'- aGGCCGGCGcGCGgccccgaGGCCGCgGGcGCGc- -3'
miRNA:   3'- -CCGGCUGC-CGC-------CCGGCGaCCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 68043 0.68 0.410162
Target:  5'- cGCCGgcGCGGCGGGCacggGCUcGGcgacggGCAGGu -3'
miRNA:   3'- cCGGC--UGCCGCCCGg---CGA-CCa-----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 30800 0.68 0.41845
Target:  5'- aGCCGAUGGCcccggGGGCaCGC-GG-GCGGGa -3'
miRNA:   3'- cCGGCUGCCG-----CCCG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 37310 0.68 0.421794
Target:  5'- uGGCCGACGGgcccccgccgaccgaCGGGCCGCUGcucaccccGCucggGGAg -3'
miRNA:   3'- -CCGGCUGCC---------------GCCCGGCGACca------CG----UCU- -5'
29396 5' -63.8 NC_006151.1 + 78655 0.68 0.461361
Target:  5'- uGGUggaGGCGGcCGGGgCGCgGGUGCuGGAc -3'
miRNA:   3'- -CCGg--CUGCC-GCCCgGCGaCCACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 127451 0.68 0.461361
Target:  5'- aGCCGGCGGCGcacGaagCGCUGGgcggcGCGGAa -3'
miRNA:   3'- cCGGCUGCCGCc--Cg--GCGACCa----CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.