Results 121 - 140 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 96817 | 0.67 | 0.488194 |
Target: 5'- gGGCUuuuaGCGGCGGGcCCGCcaaUGGgggaaaggGCGGGg -3' miRNA: 3'- -CCGGc---UGCCGCCC-GGCG---ACCa-------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 133627 | 0.66 | 0.562934 |
Target: 5'- gGGUcgCGGCGGCcgGGGCgGUgguccgGGUGCgAGAg -3' miRNA: 3'- -CCG--GCUGCCG--CCCGgCGa-----CCACG-UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 50636 | 0.66 | 0.572524 |
Target: 5'- cGCCu-CGGCGacGGCCGC-GG-GCGGAc -3' miRNA: 3'- cCGGcuGCCGC--CCGGCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 20155 | 0.66 | 0.562934 |
Target: 5'- cGGCgCGugGaccgcCGGGCCGCgcccgGGUcGCGGc -3' miRNA: 3'- -CCG-GCugCc----GCCCGGCGa----CCA-CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 56567 | 0.66 | 0.562934 |
Target: 5'- cGGgCGACGcGCcgccGCCcgacggGCUGGUGCGGAc -3' miRNA: 3'- -CCgGCUGC-CGcc--CGG------CGACCACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 117254 | 0.66 | 0.562934 |
Target: 5'- gGGcCCGAgGcGCGGGCCGCgc--GCGGc -3' miRNA: 3'- -CC-GGCUgC-CGCCCGGCGaccaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 132038 | 0.66 | 0.562934 |
Target: 5'- aGCCGGCGGCGcGCgGCaGcGcgGCGGAg -3' miRNA: 3'- cCGGCUGCCGCcCGgCGaC-Ca-CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 30615 | 0.66 | 0.572524 |
Target: 5'- gGGCgGuCGGCGuGCgCGCU-GUGCGGGu -3' miRNA: 3'- -CCGgCuGCCGCcCG-GCGAcCACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 91746 | 0.66 | 0.572524 |
Target: 5'- cGGCgGGCGaGCGGGCUcggGCgggcGGUGUgcgccAGAc -3' miRNA: 3'- -CCGgCUGC-CGCCCGG---CGa---CCACG-----UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 5546 | 0.66 | 0.553387 |
Target: 5'- cGCCucgcGGCGGCGGGCUcgucgagcagggGCUcgcGGUGCuGGu -3' miRNA: 3'- cCGG----CUGCCGCCCGG------------CGA---CCACGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 102122 | 0.66 | 0.547682 |
Target: 5'- gGGCCGgagccuguuccccggGCGcGcCGGGCUGCUGGaGCGc- -3' miRNA: 3'- -CCGGC---------------UGC-C-GCCCGGCGACCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3245 | 0.66 | 0.54389 |
Target: 5'- cGGCgCGGCGGCGGagcggggcGCCGC-GGcgcGCGGc -3' miRNA: 3'- -CCG-GCUGCCGCC--------CGGCGaCCa--CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 92180 | 0.66 | 0.525061 |
Target: 5'- cGCCGACGGCgacgGGGCCGCcGacGCGc- -3' miRNA: 3'- cCGGCUGCCG----CCCGGCGaCcaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 59847 | 0.66 | 0.525061 |
Target: 5'- cGGCCGGucCGGgGGGCgcaGCUGccGCAGc -3' miRNA: 3'- -CCGGCU--GCCgCCCGg--CGACcaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 64537 | 0.66 | 0.525061 |
Target: 5'- cGGCCGcgucggggGCGGCGaGGCCG-UGGcGCGc- -3' miRNA: 3'- -CCGGC--------UGCCGC-CCGGCgACCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 90748 | 0.66 | 0.525061 |
Target: 5'- cGCCcucgggGGCGGCGGGCaCGgUGGcggggucgGCGGGc -3' miRNA: 3'- cCGG------CUGCCGCCCG-GCgACCa-------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 26286 | 0.66 | 0.534446 |
Target: 5'- gGGCgGACGGUGGGgUGgggggGGUGgGGGg -3' miRNA: 3'- -CCGgCUGCCGCCCgGCga---CCACgUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 31688 | 0.66 | 0.534446 |
Target: 5'- gGGCCGcCGaGCcGGCCGCgccauUGGgcgccggGCGGAa -3' miRNA: 3'- -CCGGCuGC-CGcCCGGCG-----ACCa------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 117032 | 0.66 | 0.534446 |
Target: 5'- gGGCCG-CaGGCGGuaccaGCCgaaGCUGG-GCAGGu -3' miRNA: 3'- -CCGGCuG-CCGCC-----CGG---CGACCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 52368 | 0.66 | 0.534446 |
Target: 5'- cGCCGGCGcGCccccgGGGcCCGCgGGggcgGCGGGc -3' miRNA: 3'- cCGGCUGC-CG-----CCC-GGCGaCCa---CGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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