Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 127280 | 0.69 | 0.370296 |
Target: 5'- aGGUCGAUGaCGGGUCGggGGUGCuGGu -3' miRNA: 3'- -CCGGCUGCcGCCCGGCgaCCACGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 31760 | 0.69 | 0.378055 |
Target: 5'- cGCCugcGGCGGCGGGCgCGCgccGG-GCGGc -3' miRNA: 3'- cCGG---CUGCCGCCCG-GCGa--CCaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 129437 | 0.69 | 0.38513 |
Target: 5'- cGGCCccaaGugGGCGGGgCGCacggccgUGG-GCGGGa -3' miRNA: 3'- -CCGG----CugCCGCCCgGCG-------ACCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 103627 | 0.69 | 0.385922 |
Target: 5'- cGCCGACgcgguGGCGGcGgCGCUGGcggacGCGGAc -3' miRNA: 3'- cCGGCUG-----CCGCC-CgGCGACCa----CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 110833 | 0.69 | 0.385922 |
Target: 5'- aGGCCGACcgugGGcCGGGCCcaGCUGcUGUAGu -3' miRNA: 3'- -CCGGCUG----CC-GCCCGG--CGACcACGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 36862 | 0.69 | 0.385922 |
Target: 5'- cGGCCucgccgggGACGGCGGGgCGCccccGCAGAg -3' miRNA: 3'- -CCGG--------CUGCCGCCCgGCGaccaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 23001 | 0.69 | 0.385922 |
Target: 5'- cGGCCGcGCGGgugGGGgCGCgggGGUGguGGa -3' miRNA: 3'- -CCGGC-UGCCg--CCCgGCGa--CCACguCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 5232 | 0.69 | 0.391493 |
Target: 5'- aGGCCGagcgccgcgcggcgGCGGCGGGggcCCGggGG-GCGGAg -3' miRNA: 3'- -CCGGC--------------UGCCGCCC---GGCgaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 10196 | 0.69 | 0.393896 |
Target: 5'- cGGUCG-CGGCgcGGGCgGC-GGcUGCAGAg -3' miRNA: 3'- -CCGGCuGCCG--CCCGgCGaCC-ACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 97992 | 0.69 | 0.393896 |
Target: 5'- uGCCgGGCGGCGuGGCCGCguagGCGGc -3' miRNA: 3'- cCGG-CUGCCGC-CCGGCGaccaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 131954 | 0.69 | 0.401977 |
Target: 5'- cGGgCGAgGGCGGGCgGCaguacgugUGGUcGCGGu -3' miRNA: 3'- -CCgGCUgCCGCCCGgCG--------ACCA-CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 35474 | 0.69 | 0.401977 |
Target: 5'- uGGCCGGCGGCcgccaucuuGGGCCGggcaUGcaaaGCAGAc -3' miRNA: 3'- -CCGGCUGCCG---------CCCGGCg---ACca--CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 89269 | 0.69 | 0.401977 |
Target: 5'- uGGUCGACGGCGccgcggcgauGGCCGCcGcGUagagcgccaGCAGAg -3' miRNA: 3'- -CCGGCUGCCGC----------CCGGCGaC-CA---------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 104594 | 0.69 | 0.401977 |
Target: 5'- aGGCCGGCGGCa-GCCGC-GGcGCcGAg -3' miRNA: 3'- -CCGGCUGCCGccCGGCGaCCaCGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 68043 | 0.68 | 0.410162 |
Target: 5'- cGCCGgcGCGGCGGGCacggGCUcGGcgacggGCAGGu -3' miRNA: 3'- cCGGC--UGCCGCCCGg---CGA-CCa-----CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 130265 | 0.68 | 0.417617 |
Target: 5'- aGGCCGGCGcGCGgccccgaGGCCGCgGGcGCGc- -3' miRNA: 3'- -CCGGCUGC-CGC-------CCGGCGaCCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 30800 | 0.68 | 0.41845 |
Target: 5'- aGCCGAUGGCcccggGGGCaCGC-GG-GCGGGa -3' miRNA: 3'- cCGGCUGCCG-----CCCG-GCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 37310 | 0.68 | 0.421794 |
Target: 5'- uGGCCGACGGgcccccgccgaccgaCGGGCCGCUGcucaccccGCucggGGAg -3' miRNA: 3'- -CCGGCUGCC---------------GCCCGGCGACca------CG----UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 90130 | 0.68 | 0.421794 |
Target: 5'- aGGCaGGCGGggcgguagugcgcguCGGGcCCGCUGGcgacGCAGAc -3' miRNA: 3'- -CCGgCUGCC---------------GCCC-GGCGACCa---CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 4342 | 0.68 | 0.426839 |
Target: 5'- cGGCgaaGGCGGCGcGGaCGCgGGcGCAGAg -3' miRNA: 3'- -CCGg--CUGCCGC-CCgGCGaCCaCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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