miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 73114 0.68 0.426839
Target:  5'- cGCCGGCGGCGcGCCcGCgcgGGUuGCAc- -3'
miRNA:   3'- cCGGCUGCCGCcCGG-CGa--CCA-CGUcu -5'
29396 5' -63.8 NC_006151.1 + 82612 0.68 0.435327
Target:  5'- gGGCCcGCGcGCGGgcGCCGCggugGGcGCGGGa -3'
miRNA:   3'- -CCGGcUGC-CGCC--CGGCGa---CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 66950 0.68 0.435327
Target:  5'- aGG-CGGCGGCGGGCgcggcaCGCUGGaGCu-- -3'
miRNA:   3'- -CCgGCUGCCGCCCG------GCGACCaCGucu -5'
29396 5' -63.8 NC_006151.1 + 121297 0.68 0.437892
Target:  5'- uGGCCGACcgcgacgGGCGcuggagcguggaggcGGCCGCcgagcUGGUGCGcGAc -3'
miRNA:   3'- -CCGGCUG-------CCGC---------------CCGGCG-----ACCACGU-CU- -5'
29396 5' -63.8 NC_006151.1 + 133396 0.68 0.443911
Target:  5'- cGGCCGGggcCGaGCGGGCgGUcuUGGccGCGGAc -3'
miRNA:   3'- -CCGGCU---GC-CGCCCGgCG--ACCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 106793 0.68 0.443911
Target:  5'- uGGCCGcgGCGGCGGuGCucgucggggcccCGCUGGUGa--- -3'
miRNA:   3'- -CCGGC--UGCCGCC-CG------------GCGACCACgucu -5'
29396 5' -63.8 NC_006151.1 + 69699 0.68 0.443911
Target:  5'- cGUCGAUGGUGGccGCCGCcGGggGCAGc -3'
miRNA:   3'- cCGGCUGCCGCC--CGGCGaCCa-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 141619 0.68 0.443911
Target:  5'- uGCCGGgaucgGGCGGGUCGCUGccGCGGc -3'
miRNA:   3'- cCGGCUg----CCGCCCGGCGACcaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 71957 0.68 0.45259
Target:  5'- uGGCCGccuCGGCGuuGUCGC-GGUGCGGc -3'
miRNA:   3'- -CCGGCu--GCCGCc-CGGCGaCCACGUCu -5'
29396 5' -63.8 NC_006151.1 + 127451 0.68 0.461361
Target:  5'- aGCCGGCGGCGcacGaagCGCUGGgcggcGCGGAa -3'
miRNA:   3'- cCGGCUGCCGCc--Cg--GCGACCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 78655 0.68 0.461361
Target:  5'- uGGUggaGGCGGcCGGGgCGCgGGUGCuGGAc -3'
miRNA:   3'- -CCGg--CUGCC-GCCCgGCGaCCACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 5031 0.68 0.461361
Target:  5'- gGGCCGGggcCGGgGaGGCCGCg---GCGGAg -3'
miRNA:   3'- -CCGGCU---GCCgC-CCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 11036 0.68 0.461361
Target:  5'- gGGCCGGcCGGCcggGGGCCcggcCUGGacGCGGGc -3'
miRNA:   3'- -CCGGCU-GCCG---CCCGGc---GACCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 81736 0.67 0.470221
Target:  5'- cGCCGAagguccaGGCGGcGCggaGCUGGUccGCGGGc -3'
miRNA:   3'- cCGGCUg------CCGCC-CGg--CGACCA--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 97360 0.67 0.470221
Target:  5'- aGGCCGcggcgGCGGCGGGC-GCg---GCGGGg -3'
miRNA:   3'- -CCGGC-----UGCCGCCCGgCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 134101 0.67 0.470221
Target:  5'- uGGaCgGAgGGC-GGCUGCUGGUGUgccGGAg -3'
miRNA:   3'- -CC-GgCUgCCGcCCGGCGACCACG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 115563 0.67 0.470221
Target:  5'- cGCCcGCgGGCGGGCgCGC-GG-GCAGGu -3'
miRNA:   3'- cCGGcUG-CCGCCCG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 118883 0.67 0.470221
Target:  5'- cGGCgCGGCGGCGacgcGGCCGCcGGcgGCcucGAg -3'
miRNA:   3'- -CCG-GCUGCCGC----CCGGCGaCCa-CGu--CU- -5'
29396 5' -63.8 NC_006151.1 + 38177 0.67 0.470221
Target:  5'- cGCCcGCaccGUGGcGCCGCUGGUGCGc- -3'
miRNA:   3'- cCGGcUGc--CGCC-CGGCGACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 107048 0.67 0.470221
Target:  5'- uGGCCGGCGaGCcGGCCugccucguGCUGGUGgAc- -3'
miRNA:   3'- -CCGGCUGC-CGcCCGG--------CGACCACgUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.