Results 101 - 120 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 133342 | 0.7 | 0.34768 |
Target: 5'- cGGCCGguuccGCGGCGGcGgUGgUGGUGguGGu -3' miRNA: 3'- -CCGGC-----UGCCGCC-CgGCgACCACguCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 29432 | 0.7 | 0.34768 |
Target: 5'- uGGCCG-CGGgGGGCgGCggggagagGGgacGCGGAg -3' miRNA: 3'- -CCGGCuGCCgCCCGgCGa-------CCa--CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 27473 | 0.7 | 0.34768 |
Target: 5'- cGGUCGAgCGGgGGGUCGgCggGGUGguGGg -3' miRNA: 3'- -CCGGCU-GCCgCCCGGC-Ga-CCACguCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 135105 | 0.7 | 0.340365 |
Target: 5'- gGGCgGGCGGCGGuaGCgCGCgGG-GCGGGc -3' miRNA: 3'- -CCGgCUGCCGCC--CG-GCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 139190 | 0.7 | 0.333161 |
Target: 5'- uGCUGGCGGuCGGGgCGCUGGagcuccugGCGGc -3' miRNA: 3'- cCGGCUGCC-GCCCgGCGACCa-------CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 64475 | 0.7 | 0.333161 |
Target: 5'- cGCCGccGCGGCGGGgacgcCCGCgGGcGCGGGc -3' miRNA: 3'- cCGGC--UGCCGCCC-----GGCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 120793 | 0.7 | 0.333161 |
Target: 5'- cGGCCGACGcggaGCGcGCCGCgcgcgaGGUGCuGGAc -3' miRNA: 3'- -CCGGCUGC----CGCcCGGCGa-----CCACG-UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 136988 | 0.7 | 0.333161 |
Target: 5'- cGCCgGGCGGCGGGCgcgcgcgcacggCGCUGG-GCGc- -3' miRNA: 3'- cCGG-CUGCCGCCCG------------GCGACCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 78122 | 0.7 | 0.31909 |
Target: 5'- cGCCauccuGCGGCGGGCCGCgGGcGCcucGGAc -3' miRNA: 3'- cCGGc----UGCCGCCCGGCGaCCaCG---UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 134641 | 0.7 | 0.31909 |
Target: 5'- uGCUGACGcGCGaGCCGCUGG-GCuGGAu -3' miRNA: 3'- cCGGCUGC-CGCcCGGCGACCaCG-UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 122171 | 0.71 | 0.312224 |
Target: 5'- -aUCGGCGGCGGGCuCG-UGGUGCcgccGGAg -3' miRNA: 3'- ccGGCUGCCGCCCG-GCgACCACG----UCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 103313 | 0.71 | 0.312224 |
Target: 5'- cGGCgCGACGccgaGCuGcGCaCGCUGGUGCAGGc -3' miRNA: 3'- -CCG-GCUGC----CGcC-CG-GCGACCACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 18159 | 0.71 | 0.29883 |
Target: 5'- gGGgCGGCGGCGGGCaUGUcGGaaUGCGGGc -3' miRNA: 3'- -CCgGCUGCCGCCCG-GCGaCC--ACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3392 | 0.71 | 0.29883 |
Target: 5'- gGGCCGccuCGGaGGGCCGCgGcGUGUGGGu -3' miRNA: 3'- -CCGGCu--GCCgCCCGGCGaC-CACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 97502 | 0.71 | 0.292302 |
Target: 5'- cGCCucGCGGCGGuGgCGCUGcGUGUAGAc -3' miRNA: 3'- cCGGc-UGCCGCC-CgGCGAC-CACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 44198 | 0.71 | 0.292302 |
Target: 5'- cGGgCGGCGGCGGGagauggugauggUgGUUGGUGguGAu -3' miRNA: 3'- -CCgGCUGCCGCCC------------GgCGACCACguCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 32785 | 0.71 | 0.292302 |
Target: 5'- cGGCCG-CGGgGGGCCGaagcGGacGCGGAa -3' miRNA: 3'- -CCGGCuGCCgCCCGGCga--CCa-CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 109707 | 0.71 | 0.288439 |
Target: 5'- aGGCCGAgacccCGGCGaccccgcugcgcucGCCGCUGGaGCGGAu -3' miRNA: 3'- -CCGGCU-----GCCGCc-------------CGGCGACCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 102967 | 0.71 | 0.279581 |
Target: 5'- cGCCcacGACGGCGcGCUGCUGGcGCAGc -3' miRNA: 3'- cCGG---CUGCCGCcCGGCGACCaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 137354 | 0.71 | 0.275851 |
Target: 5'- aGGCCGACGGCgacuGGGCCGCgcaccccugcuacGUGUacaAGAg -3' miRNA: 3'- -CCGGCUGCCG----CCCGGCGac-----------CACG---UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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