miRNA display CGI


Results 121 - 140 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 119117 0.67 0.479166
Target:  5'- aGCCGcGCGGCcggccucgugGGGgCGCUGGUGUu-- -3'
miRNA:   3'- cCGGC-UGCCG----------CCCgGCGACCACGucu -5'
29396 5' -63.8 NC_006151.1 + 120793 0.7 0.333161
Target:  5'- cGGCCGACGcggaGCGcGCCGCgcgcgaGGUGCuGGAc -3'
miRNA:   3'- -CCGGCUGC----CGCcCGGCGa-----CCACG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 121144 1.09 0.000558
Target:  5'- uGGCCGACGGCGGGCCGCUGGUGCAGAc -3'
miRNA:   3'- -CCGGCUGCCGCCCGGCGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 121297 0.68 0.437892
Target:  5'- uGGCCGACcgcgacgGGCGcuggagcguggaggcGGCCGCcgagcUGGUGCGcGAc -3'
miRNA:   3'- -CCGGCUG-------CCGC---------------CCGGCG-----ACCACGU-CU- -5'
29396 5' -63.8 NC_006151.1 + 121832 0.74 0.193267
Target:  5'- uGCCGcuaccucgcGCGGCGGcuGCCGCUGGaggcGCAGAc -3'
miRNA:   3'- cCGGC---------UGCCGCC--CGGCGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 122171 0.71 0.312224
Target:  5'- -aUCGGCGGCGGGCuCG-UGGUGCcgccGGAg -3'
miRNA:   3'- ccGGCUGCCGCCCG-GCgACCACG----UCU- -5'
29396 5' -63.8 NC_006151.1 + 122943 0.84 0.03874
Target:  5'- cGCCGACGGCGGcGCCGCggggGGcGCGGAc -3'
miRNA:   3'- cCGGCUGCCGCC-CGGCGa---CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 125385 0.67 0.515739
Target:  5'- gGGCCGcAUcGC-GGCCGcCUGGUGCGa- -3'
miRNA:   3'- -CCGGC-UGcCGcCCGGC-GACCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 126135 0.66 0.572524
Target:  5'- gGGgCGcuCGccauCGGGCUGCUGGUGCuGGc -3'
miRNA:   3'- -CCgGCu-GCc---GCCCGGCGACCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 127280 0.69 0.370296
Target:  5'- aGGUCGAUGaCGGGUCGggGGUGCuGGu -3'
miRNA:   3'- -CCGGCUGCcGCCCGGCgaCCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 127310 0.69 0.362647
Target:  5'- aGGCCGucgucCGcGCGGGuCCGCgggcgggGGUGCuGGu -3'
miRNA:   3'- -CCGGCu----GC-CGCCC-GGCGa------CCACGuCU- -5'
29396 5' -63.8 NC_006151.1 + 127451 0.68 0.461361
Target:  5'- aGCCGGCGGCGcacGaagCGCUGGgcggcGCGGAa -3'
miRNA:   3'- cCGGCUGCCGCc--Cg--GCGACCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 128537 0.74 0.179941
Target:  5'- aGGCC-ACGGCGGGcCCGCcGGcGCGGu -3'
miRNA:   3'- -CCGGcUGCCGCCC-GGCGaCCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 129217 0.66 0.553387
Target:  5'- gGGCCGcCaGCaGGCaGCUGGcGCGGGu -3'
miRNA:   3'- -CCGGCuGcCGcCCGgCGACCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 129437 0.69 0.38513
Target:  5'- cGGCCccaaGugGGCGGGgCGCacggccgUGG-GCGGGa -3'
miRNA:   3'- -CCGG----CugCCGCCCgGCG-------ACCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 130265 0.68 0.417617
Target:  5'- aGGCCGGCGcGCGgccccgaGGCCGCgGGcGCGc- -3'
miRNA:   3'- -CCGGCUGC-CGC-------CCGGCGaCCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 130943 0.74 0.18429
Target:  5'- gGGgCGGCGGgGGGUCGCgcgGGcGCGGGg -3'
miRNA:   3'- -CCgGCUGCCgCCCGGCGa--CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 131102 0.67 0.497301
Target:  5'- cGUCGGCGGgGGGCCcgGCcgcGGcGCGGGa -3'
miRNA:   3'- cCGGCUGCCgCCCGG--CGa--CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 131868 0.73 0.212375
Target:  5'- cGCCGGCGGCgucGGGUCGCaGG-GCAGc -3'
miRNA:   3'- cCGGCUGCCG---CCCGGCGaCCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 131954 0.69 0.401977
Target:  5'- cGGgCGAgGGCGGGCgGCaguacgugUGGUcGCGGu -3'
miRNA:   3'- -CCgGCUgCCGCCCGgCG--------ACCA-CGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.