miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 115658 0.71 0.272774
Target:  5'- cGGCCGAUGGUcgucacgGuGGCCGCcacgGGgagGCAGGg -3'
miRNA:   3'- -CCGGCUGCCG-------C-CCGGCGa---CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 115563 0.67 0.470221
Target:  5'- cGCCcGCgGGCGGGCgCGC-GG-GCAGGu -3'
miRNA:   3'- cCGGcUG-CCGCCCG-GCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 113104 0.67 0.488194
Target:  5'- -aCCGGgGGCgGGGCCGC-GGacGCGGAc -3'
miRNA:   3'- ccGGCUgCCG-CCCGGCGaCCa-CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 112602 0.71 0.273387
Target:  5'- aGGCCG-CcGCGGcGCCGCUGGcGCuGGAc -3'
miRNA:   3'- -CCGGCuGcCGCC-CGGCGACCaCG-UCU- -5'
29396 5' -63.8 NC_006151.1 + 112044 0.81 0.064863
Target:  5'- gGGCCGGCgGGCGGGCgGCggcGGUGguGGu -3'
miRNA:   3'- -CCGGCUG-CCGCCCGgCGa--CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 110833 0.69 0.385922
Target:  5'- aGGCCGACcgugGGcCGGGCCcaGCUGcUGUAGu -3'
miRNA:   3'- -CCGGCUG----CC-GCCCGG--CGACcACGUCu -5'
29396 5' -63.8 NC_006151.1 + 109707 0.71 0.288439
Target:  5'- aGGCCGAgacccCGGCGaccccgcugcgcucGCCGCUGGaGCGGAu -3'
miRNA:   3'- -CCGGCU-----GCCGCc-------------CGGCGACCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 107048 0.67 0.470221
Target:  5'- uGGCCGGCGaGCcGGCCugccucguGCUGGUGgAc- -3'
miRNA:   3'- -CCGGCUGC-CGcCCGG--------CGACCACgUcu -5'
29396 5' -63.8 NC_006151.1 + 106793 0.68 0.443911
Target:  5'- uGGCCGcgGCGGCGGuGCucgucggggcccCGCUGGUGa--- -3'
miRNA:   3'- -CCGGC--UGCCGCC-CG------------GCGACCACgucu -5'
29396 5' -63.8 NC_006151.1 + 104594 0.69 0.401977
Target:  5'- aGGCCGGCGGCa-GCCGC-GGcGCcGAg -3'
miRNA:   3'- -CCGGCUGCCGccCGGCGaCCaCGuCU- -5'
29396 5' -63.8 NC_006151.1 + 104271 0.78 0.102337
Target:  5'- cGGCgCGGCGGCGGGcCCGCcGcUGCAGGc -3'
miRNA:   3'- -CCG-GCUGCCGCCC-GGCGaCcACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 104003 0.67 0.506484
Target:  5'- cGGCCGuggaGGCGcGCCGCgcg-GCGGAg -3'
miRNA:   3'- -CCGGCug--CCGCcCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 103790 0.66 0.569642
Target:  5'- cGCUGGCGGCGcugcaGGCCGCgcugucggcggccgUGGcgGCGGc -3'
miRNA:   3'- cCGGCUGCCGC-----CCGGCG--------------ACCa-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 103627 0.69 0.385922
Target:  5'- cGCCGACgcgguGGCGGcGgCGCUGGcggacGCGGAc -3'
miRNA:   3'- cCGGCUG-----CCGCC-CgGCGACCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 103313 0.71 0.312224
Target:  5'- cGGCgCGACGccgaGCuGcGCaCGCUGGUGCAGGc -3'
miRNA:   3'- -CCG-GCUGC----CGcC-CG-GCGACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 102967 0.71 0.279581
Target:  5'- cGCCcacGACGGCGcGCUGCUGGcGCAGc -3'
miRNA:   3'- cCGG---CUGCCGCcCGGCGACCaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 102122 0.66 0.547682
Target:  5'- gGGCCGgagccuguuccccggGCGcGcCGGGCUGCUGGaGCGc- -3'
miRNA:   3'- -CCGGC---------------UGC-C-GCCCGGCGACCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 98958 0.69 0.362647
Target:  5'- gGGCCGugGaCGaGGCggCGCUGGUGCc-- -3'
miRNA:   3'- -CCGGCugCcGC-CCG--GCGACCACGucu -5'
29396 5' -63.8 NC_006151.1 + 97992 0.69 0.393896
Target:  5'- uGCCgGGCGGCGuGGCCGCguagGCGGc -3'
miRNA:   3'- cCGG-CUGCCGC-CCGGCGaccaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 97502 0.71 0.292302
Target:  5'- cGCCucGCGGCGGuGgCGCUGcGUGUAGAc -3'
miRNA:   3'- cCGGc-UGCCGCC-CgGCGAC-CACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.