miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 97360 0.67 0.470221
Target:  5'- aGGCCGcggcgGCGGCGGGC-GCg---GCGGGg -3'
miRNA:   3'- -CCGGC-----UGCCGCCCGgCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 96817 0.67 0.488194
Target:  5'- gGGCUuuuaGCGGCGGGcCCGCcaaUGGgggaaaggGCGGGg -3'
miRNA:   3'- -CCGGc---UGCCGCCC-GGCG---ACCa-------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 95394 0.66 0.553387
Target:  5'- cGCCG--GGCGuGGcCCGCUGcacgaucuccGUGCAGAg -3'
miRNA:   3'- cCGGCugCCGC-CC-GGCGAC----------CACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 92566 0.66 0.572524
Target:  5'- uGGCCGAgucgcUGGaGGGCCGCgaGGUGg--- -3'
miRNA:   3'- -CCGGCU-----GCCgCCCGGCGa-CCACgucu -5'
29396 5' -63.8 NC_006151.1 + 92180 0.66 0.525061
Target:  5'- cGCCGACGGCgacgGGGCCGCcGacGCGc- -3'
miRNA:   3'- cCGGCUGCCG----CCCGGCGaCcaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 91746 0.66 0.572524
Target:  5'- cGGCgGGCGaGCGGGCUcggGCgggcGGUGUgcgccAGAc -3'
miRNA:   3'- -CCGgCUGC-CGCCCGG---CGa---CCACG-----UCU- -5'
29396 5' -63.8 NC_006151.1 + 90748 0.66 0.525061
Target:  5'- cGCCcucgggGGCGGCGGGCaCGgUGGcggggucgGCGGGc -3'
miRNA:   3'- cCGG------CUGCCGCCCG-GCgACCa-------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 90666 0.73 0.224603
Target:  5'- cGCgGgGCGGCGGGCCGCUugucccccgcggcggGGgcgGCGGAc -3'
miRNA:   3'- cCGgC-UGCCGCCCGGCGA---------------CCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 90130 0.68 0.421794
Target:  5'- aGGCaGGCGGggcgguagugcgcguCGGGcCCGCUGGcgacGCAGAc -3'
miRNA:   3'- -CCGgCUGCC---------------GCCC-GGCGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 89716 0.72 0.24971
Target:  5'- -cCCGGCGGCGccGGCCGCggccgcGGUGguGGg -3'
miRNA:   3'- ccGGCUGCCGC--CCGGCGa-----CCACguCU- -5'
29396 5' -63.8 NC_006151.1 + 89269 0.69 0.401977
Target:  5'- uGGUCGACGGCGccgcggcgauGGCCGCcGcGUagagcgccaGCAGAg -3'
miRNA:   3'- -CCGGCUGCCGC----------CCGGCGaC-CA---------CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 85912 0.65 0.581187
Target:  5'- uGGCCGugcaguacgaggaGgGGCuGGGCCuGCUGcUGCAGc -3'
miRNA:   3'- -CCGGC-------------UgCCG-CCCGG-CGACcACGUCu -5'
29396 5' -63.8 NC_006151.1 + 85166 0.75 0.171515
Target:  5'- gGGCCGGCGccGCGGGCgccgccgcccCGCUGGgcaucGCGGAc -3'
miRNA:   3'- -CCGGCUGC--CGCCCG----------GCGACCa----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 84819 0.83 0.04765
Target:  5'- cGGCCG-CGGacgGGGCCGCgaGGUGCAGAu -3'
miRNA:   3'- -CCGGCuGCCg--CCCGGCGa-CCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 84675 0.73 0.227225
Target:  5'- aGGCCGA-GGUGgacgagcagcugcGGCCGCUGGagcgGCAGGu -3'
miRNA:   3'- -CCGGCUgCCGC-------------CCGGCGACCa---CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 84627 0.67 0.512955
Target:  5'- cGGCCGccGCGGCGcuggacaacgccauGGCCGCgGGcGCGc- -3'
miRNA:   3'- -CCGGC--UGCCGC--------------CCGGCGaCCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 82612 0.68 0.435327
Target:  5'- gGGCCcGCGcGCGGgcGCCGCggugGGcGCGGGa -3'
miRNA:   3'- -CCGGcUGC-CGCC--CGGCGa---CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 81736 0.67 0.470221
Target:  5'- cGCCGAagguccaGGCGGcGCggaGCUGGUccGCGGGc -3'
miRNA:   3'- cCGGCUg------CCGCC-CGg--CGACCA--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 81535 0.73 0.210887
Target:  5'- cGGCCG-CGGCGGcgcgcuCCGCggugcacauggccgUGGUGCGGAg -3'
miRNA:   3'- -CCGGCuGCCGCCc-----GGCG--------------ACCACGUCU- -5'
29396 5' -63.8 NC_006151.1 + 78655 0.68 0.461361
Target:  5'- uGGUggaGGCGGcCGGGgCGCgGGUGCuGGAc -3'
miRNA:   3'- -CCGg--CUGCC-GCCCgGCGaCCACG-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.