miRNA display CGI


Results 81 - 100 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29396 5' -63.8 NC_006151.1 + 78122 0.7 0.31909
Target:  5'- cGCCauccuGCGGCGGGCCGCgGGcGCcucGGAc -3'
miRNA:   3'- cCGGc----UGCCGCCCGGCGaCCaCG---UCU- -5'
29396 5' -63.8 NC_006151.1 + 77532 0.69 0.362647
Target:  5'- cGGCCG-CGcGUGGGCCGCccc-GCAGGg -3'
miRNA:   3'- -CCGGCuGC-CGCCCGGCGaccaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 77373 0.72 0.267304
Target:  5'- cGCCGACGGCGGGgaCCGCgcguacuuuGUGCAcGGg -3'
miRNA:   3'- cCGGCUGCCGCCC--GGCGac-------CACGU-CU- -5'
29396 5' -63.8 NC_006151.1 + 76661 0.67 0.506484
Target:  5'- uGCgGGCGcguguGCGcGGUCGCUGGggaGCAGGg -3'
miRNA:   3'- cCGgCUGC-----CGC-CCGGCGACCa--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 75894 0.66 0.572524
Target:  5'- cGCgCGACGGCcaccgaGGG-CGC-GGUGCAGu -3'
miRNA:   3'- cCG-GCUGCCG------CCCgGCGaCCACGUCu -5'
29396 5' -63.8 NC_006151.1 + 75134 0.73 0.202626
Target:  5'- cGGCCGGCGGCGcGGCCcaGCgcgGGcGCAcGGg -3'
miRNA:   3'- -CCGGCUGCCGC-CCGG--CGa--CCaCGU-CU- -5'
29396 5' -63.8 NC_006151.1 + 73114 0.68 0.426839
Target:  5'- cGCCGGCGGCGcGCCcGCgcgGGUuGCAc- -3'
miRNA:   3'- cCGGCUGCCGCcCGG-CGa--CCA-CGUcu -5'
29396 5' -63.8 NC_006151.1 + 72266 0.72 0.24971
Target:  5'- cGCCGAgCGGCGuGGCCaGCaugcGGUGCGGc -3'
miRNA:   3'- cCGGCU-GCCGC-CCGG-CGa---CCACGUCu -5'
29396 5' -63.8 NC_006151.1 + 71957 0.68 0.45259
Target:  5'- uGGCCGccuCGGCGuuGUCGC-GGUGCGGc -3'
miRNA:   3'- -CCGGCu--GCCGCc-CGGCGaCCACGUCu -5'
29396 5' -63.8 NC_006151.1 + 69699 0.68 0.443911
Target:  5'- cGUCGAUGGUGGccGCCGCcGGggGCAGc -3'
miRNA:   3'- cCGGCUGCCGCC--CGGCGaCCa-CGUCu -5'
29396 5' -63.8 NC_006151.1 + 68764 0.72 0.26133
Target:  5'- aGCCGGCGGUGGcGCgCGCggcgaGGUGCGc- -3'
miRNA:   3'- cCGGCUGCCGCC-CG-GCGa----CCACGUcu -5'
29396 5' -63.8 NC_006151.1 + 68043 0.68 0.410162
Target:  5'- cGCCGgcGCGGCGGGCacggGCUcGGcgacggGCAGGu -3'
miRNA:   3'- cCGGC--UGCCGCCCGg---CGA-CCa-----CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 66950 0.68 0.435327
Target:  5'- aGG-CGGCGGCGGGCgcggcaCGCUGGaGCu-- -3'
miRNA:   3'- -CCgGCUGCCGCCCG------GCGACCaCGucu -5'
29396 5' -63.8 NC_006151.1 + 65779 0.75 0.171103
Target:  5'- cGCCGGCGGCGGcgauggcGCCGCccGGcGCGGAc -3'
miRNA:   3'- cCGGCUGCCGCC-------CGGCGa-CCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 64856 0.74 0.188732
Target:  5'- gGGCCucGGCGGaGGGCCGCUGcccgGCGGGa -3'
miRNA:   3'- -CCGG--CUGCCgCCCGGCGACca--CGUCU- -5'
29396 5' -63.8 NC_006151.1 + 64537 0.66 0.525061
Target:  5'- cGGCCGcgucggggGCGGCGaGGCCG-UGGcGCGc- -3'
miRNA:   3'- -CCGGC--------UGCCGC-CCGGCgACCaCGUcu -5'
29396 5' -63.8 NC_006151.1 + 64475 0.7 0.333161
Target:  5'- cGCCGccGCGGCGGGgacgcCCGCgGGcGCGGGc -3'
miRNA:   3'- cCGGC--UGCCGCCC-----GGCGaCCaCGUCU- -5'
29396 5' -63.8 NC_006151.1 + 61761 0.67 0.479166
Target:  5'- cGGUCG-CGG-GGGCCG-UGGUGCu-- -3'
miRNA:   3'- -CCGGCuGCCgCCCGGCgACCACGucu -5'
29396 5' -63.8 NC_006151.1 + 59847 0.66 0.525061
Target:  5'- cGGCCGGucCGGgGGGCgcaGCUGccGCAGc -3'
miRNA:   3'- -CCGGCU--GCCgCCCGg--CGACcaCGUCu -5'
29396 5' -63.8 NC_006151.1 + 57512 0.69 0.370296
Target:  5'- cGGCCGcgGCGGCGgcGGCCGCcuccGGcGCGGc -3'
miRNA:   3'- -CCGGC--UGCCGC--CCGGCGa---CCaCGUCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.