Results 141 - 154 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 5546 | 0.66 | 0.553387 |
Target: 5'- cGCCucgcGGCGGCGGGCUcgucgagcagggGCUcgcGGUGCuGGu -3' miRNA: 3'- cCGG----CUGCCGCCCGG------------CGA---CCACGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 5232 | 0.69 | 0.391493 |
Target: 5'- aGGCCGagcgccgcgcggcgGCGGCGGGggcCCGggGG-GCGGAg -3' miRNA: 3'- -CCGGC--------------UGCCGCCC---GGCgaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 5073 | 0.76 | 0.131209 |
Target: 5'- aGGCCGAgGGCcgcgGGGCCGCggcgGGcgccgGCGGAg -3' miRNA: 3'- -CCGGCUgCCG----CCCGGCGa---CCa----CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 5031 | 0.68 | 0.461361 |
Target: 5'- gGGCCGGggcCGGgGaGGCCGCg---GCGGAg -3' miRNA: 3'- -CCGGCU---GCCgC-CCGGCGaccaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 4792 | 0.71 | 0.273387 |
Target: 5'- cGGCCG-CGGCgcgguagcGGGCCGC-GGccugGCGGAc -3' miRNA: 3'- -CCGGCuGCCG--------CCCGGCGaCCa---CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 4342 | 0.68 | 0.426839 |
Target: 5'- cGGCgaaGGCGGCGcGGaCGCgGGcGCAGAg -3' miRNA: 3'- -CCGg--CUGCCGC-CCgGCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 4208 | 0.67 | 0.497301 |
Target: 5'- gGGCCcgagGGCGGcCGGGgCGCgggcgGGcGCGGGc -3' miRNA: 3'- -CCGG----CUGCC-GCCCgGCGa----CCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 4006 | 0.67 | 0.479166 |
Target: 5'- uGGCCGG-GGCgaagaGGGCCGC-GGcGUAGGu -3' miRNA: 3'- -CCGGCUgCCG-----CCCGGCGaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3739 | 0.78 | 0.099804 |
Target: 5'- gGGCCGGCGGCGGGggaGCUGGcGUAGc -3' miRNA: 3'- -CCGGCUGCCGCCCgg-CGACCaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3428 | 0.72 | 0.26133 |
Target: 5'- cGGCCGggacGCGGCGGaaGCCGCcgucgGGcGCGGGg -3' miRNA: 3'- -CCGGC----UGCCGCC--CGGCGa----CCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3392 | 0.71 | 0.29883 |
Target: 5'- gGGCCGccuCGGaGGGCCGCgGcGUGUGGGu -3' miRNA: 3'- -CCGGCu--GCCgCCCGGCGaC-CACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3245 | 0.66 | 0.54389 |
Target: 5'- cGGCgCGGCGGCGGagcggggcGCCGC-GGcgcGCGGc -3' miRNA: 3'- -CCG-GCUGCCGCC--------CGGCGaCCa--CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3131 | 0.67 | 0.485477 |
Target: 5'- aGGCCGGgcgcggggcgcccuCGGCGGGCUc--GGcGCAGAg -3' miRNA: 3'- -CCGGCU--------------GCCGCCCGGcgaCCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 2385 | 0.67 | 0.515739 |
Target: 5'- cGGCCGGCaGGCccucgGGGCCGC-GGaGCu-- -3' miRNA: 3'- -CCGGCUG-CCG-----CCCGGCGaCCaCGucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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